{ "_id": "6a2490e64b233be19838532c", "Package": "LandR", "Type": "Package", "Title": "Landscape Ecosystem Modelling in R", "Description": "Utilities for 'LandR' suite of landscape simulation\nmodels. These models simulate forest vegetation dynamics based\non LANDIS-II, and incorporate fire and insect disturbance, as\nwell as other important ecological processes. Models are\nimplemented as 'SpaDES' modules.", "URL": "https://landr.predictiveecology.org,\nhttps://github.com/PredictiveEcology/LandR", "Date": "2026-05-28", "Version": "1.2.0.9002", "Authors@R": "c(\nperson(\"Eliot J B\", \"McIntire\", email = \"eliot.mcintire@nrcan-rncan.gc.ca\",\nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6914-8316\")),\nperson(\"Alex M\", \"Chubaty\", email = \"achubaty@for-cast.ca\",\nrole = c(\"aut\"), comment = c(ORCID = \"0000-0001-7146-8135\")),\nperson(\"Ceres\", \"Barros\", email = \"ceres.barros@ubc.ca\",\nrole = c(\"aut\"), comment = c(ORCID = \"0000-0003-4036-977X\")),\nperson(\"Ian M S\", \"Eddy\", email = \"ian.eddy@nrcan-rncan.gc.ca\",\nrole = c(\"aut\"), comment = c(ORCID = \"0000-0001-7397-2116\")),\nperson(paste(\"His Majesty the King in Right of Canada,\",\n\"as represented by the Minister of Natural Resources Canada\"),\nrole = \"cph\")\n)", "Remotes": [ "CeresBarros/biomod2@dev_currentCeres", "RNCan/BioSimClient_R", "PredictiveEcology/map@development", "PredictiveEcology/pemisc@development", "PredictiveEcology/reproducible@development", "PredictiveEcology/SpaDES.core@development", "PredictiveEcology/SpaDES.tools@development" ], "Encoding": "UTF-8", "Language": "en-CA", "License": "GPL-3", "BugReports": "https://github.com/PredictiveEcology/LandR/issues", "ByteCompile": "yes", "LazyData": "true", "Collate": "'LANDIS-II-tables.R' 'LandR-package.R' 'RcppExports.R'\n'SummarizeCanadianForestRasters.R' 'assertions.R'\n'biomodWrappers.R' 'biosim.R' 'chooseName.R' 'cohorts.R'\n'convertUnwantedLCC2.R' 'dem.R' 'disturbances.R' 'ecoregions.R'\n'ecozones.R' 'fireSeverity.R' 'imports.R' 'lccMapGenerator.R'\n'light-shade.R' 'makeDummyInputs.R' 'maps.R' 'maxBestimation.R'\n'misc.R' 'nullClimate.R' 'overlayLCCs.R' 'partitionBiomass.R'\n'plot-summaries.R' 'plot-transitions.R' 'plotting.R'\n'prepEcoregions.R' 'prepInputObjects.R' 'prepInputs_NTEMS.R'\n'prepSpeciesLayers.R' 'seedDispersalLANDIS.R'\n'serotiny-resprouting.R' 'speciesPresentFromKNN.R'\n'speciesTable.R' 'sppEquivalencies_CA.R' 'sppHarmonize.R'\n'studyArea.R' 'terra-raster-utils.R' 'wildfire.R' 'zzz.R'", "Roxygen": "list(markdown = TRUE)", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Config/testthat/start-first": "prep*", "Config/roxygen2/version": "8.0.0", "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nmake default-jdk libicu-dev libjpeg-dev libpng-dev libuv1-dev\nlibssl-dev libproj-dev libsqlite3-dev libudunits2-dev", "Repository": "https://predictiveecology.r-universe.dev", "Date/Publication": "2026-06-06 19:52:42 UTC", "RemoteUrl": "https://github.com/PredictiveEcology/LandR", "RemoteRef": "development", "RemoteSha": "f9d7d39d2f452766d2feff5b0e7037e28cb79ef6", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-06 21:17:18 UTC", "User": "root" }, "Author": "Eliot J B McIntire [aut, cre] (ORCID:\n),\nAlex M Chubaty [aut] (ORCID: ),\nCeres Barros [aut] (ORCID: ),\nIan M S Eddy [aut] (ORCID: ),\nHis Majesty the King in Right of Canada, as represented by the Minister\nof Natural Resources Canada [cph]", "Maintainer": "Eliot J B McIntire ", "MD5sum": "b2781ed7c02aa5a750993ddcb9450dbc", "_user": "predictiveecology", "_type": "src", "_file": "LandR_1.2.0.9002.tar.gz", "_fileid": "261d535a542887ac3d630cba6f49836ae88f9e10c5c84bfea1d8f5eba6316038", "_filesize": 873794, "_sha256": "261d535a542887ac3d630cba6f49836ae88f9e10c5c84bfea1d8f5eba6316038", "_created": "2026-06-06T21:17:18.000Z", "_published": "2026-06-06T21:28:06.660Z", "_distro": "noble", "_jobs": [ { "job": 79908515503, "time": 455, "config": "linux-devel-arm64", "r": "4.7.0", "check": "WARNING", "artifact": "7458051007" }, { "job": 79908515531, "time": 493, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7458055175" }, { "job": 79908515527, "time": 433, "config": "linux-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7458048479" }, { "job": 79908515513, "time": 435, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7458048433" }, { "job": 79908515518, "time": 344, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7458037081" }, { "job": 79908515516, "time": 572, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "7458064593" }, { "job": 79908515523, "time": 372, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7458040840" }, { "job": 79908515521, "time": 564, "config": "macos-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7458063381" }, { "job": 79908082958, "time": 450, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7457998211" }, { "job": 79908515498, "time": 191, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7458020593" }, { "job": 79908515514, "time": 451, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7458049962" }, { "job": 79908515504, "time": 425, "config": "windows-oldrel", "r": "4.5.3", "check": "ERROR", "artifact": "7458047107" }, { "job": 79908515501, "time": 432, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7458047882" } ], "_buildurl": "https://github.com/r-universe/predictiveecology/actions/runs/27073981787", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/PredictiveEcology/LandR", "_commit": { "id": "f9d7d39d2f452766d2feff5b0e7037e28cb79ef6", "author": "Eliot McIntire ", "committer": "Eliot McIntire ", "message": "rm quickPlot@development from DESCRIPTION\n", "time": 1780775562 }, "_maintainer": { "name": "Eliot J B McIntire", "email": "eliot.mcintire@nrcan-rncan.gc.ca", "orcid": "0000-0002-6914-8316" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.3", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "cli", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "Formula", "role": "Imports" }, { "package": "fpCompare", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "ggspatial", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "httr2", "role": "Imports" }, { "package": "lme4", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "MuMIn", "version": ">= 1.42.5", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "patchwork", "role": "Imports" }, { "package": "pemisc", "version": ">= 0.0.4.9011", "role": "Imports" }, { "package": "quickPlot", "version": ">= 1.0.4", "role": "Imports" }, { "package": "raster", "role": "Imports" }, { "package": "RColorBrewer", "role": "Imports" }, { "package": "Rcpp", "version": ">= 1.0.10", "role": "Imports" }, { "package": "reproducible", "version": ">= 3.0.0", "role": "Imports" }, { "package": "sf", "role": "Imports" }, { "package": "sp", "role": "Imports" }, { "package": "SpaDES.tools", "version": ">= 2.1.1", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "terra", "role": "Imports" }, { "package": "tidyterra", "role": "Imports" }, { "package": "tools", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "viridis", "role": "Imports" }, { "package": "arrow", "role": "Suggests" }, { "package": "bbmle", "role": "Suggests" }, { "package": "biomod2", "version": ">= 4.2-2", "role": "Suggests" }, { "package": "BioSIM", "role": "Suggests" }, { "package": "covr", "role": "Suggests" }, { "package": "curl", "version": ">= 6.4.0", "role": "Suggests" }, { "package": "digest", "role": "Suggests" }, { "package": "dplyr", "role": "Suggests" }, { "package": "fasterize", "role": "Suggests" }, { "package": "future", "role": "Suggests" }, { "package": "future.apply", "role": "Suggests" }, { "package": "geodata", "role": "Suggests" }, { "package": "ggalluvial", "role": "Suggests" }, { "package": "ggpubr", "role": "Suggests" }, { "package": "ggrepel", "role": "Suggests" }, { "package": "googledrive", "version": ">= 2.0.0", "role": "Suggests" }, { "package": "httr", "role": "Suggests" }, { "package": "lqmm", "role": "Suggests" }, { "package": "map", "role": "Suggests" }, { "package": "MASS", "role": "Suggests" }, { "package": "memuse", "role": "Suggests" }, { "package": "parallelly", "role": "Suggests" }, { "package": "purrr", "role": "Suggests" }, { "package": "qs2", "role": "Suggests" }, { "package": "rasterVis", "role": "Suggests" }, { "package": "RCurl", "role": "Suggests" }, { "package": "RhpcBLASctl", "role": "Suggests" }, { "package": "rlang", "role": "Suggests" }, { "package": "roxygen2", "role": "Suggests" }, { "package": "R.utils", "role": "Suggests" }, { "package": "SpaDES.core", "role": "Suggests" }, { "package": "spelling", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "withr", "role": "Suggests" }, { "package": "XML", "role": "Suggests" }, { "package": "zonal", "role": "Suggests" } ], "_owner": "predictiveecology", "_selfowned": true, "_usedby": 3, "_updates": [ { "week": "2025-23", "n": 8 }, { "week": "2025-24", "n": 7 }, { "week": "2025-25", "n": 2 }, { "week": "2025-29", "n": 5 }, { "week": "2025-30", "n": 3 }, { "week": "2025-31", "n": 5 }, { "week": "2025-33", "n": 1 }, { "week": "2025-34", "n": 1 }, { "week": "2025-36", "n": 7 }, { "week": "2025-37", "n": 1 }, { "week": "2025-41", "n": 2 }, { "week": "2025-42", "n": 12 }, { "week": "2025-43", "n": 8 }, { "week": "2025-45", "n": 10 }, { "week": "2025-46", "n": 10 }, { "week": "2025-48", "n": 13 }, { "week": "2025-49", "n": 11 }, { "week": "2025-50", "n": 3 }, { "week": "2025-51", "n": 1 }, { "week": "2026-01", "n": 1 }, { "week": "2026-02", "n": 2 }, { "week": "2026-04", "n": 1 }, { "week": "2026-05", "n": 3 }, { "week": "2026-06", "n": 8 }, { "week": "2026-07", "n": 1 }, { "week": "2026-11", "n": 1 }, { "week": "2026-12", "n": 1 }, { "week": "2026-13", "n": 4 }, { "week": "2026-20", "n": 4 }, { "week": "2026-22", "n": 6 }, { "week": "2026-23", "n": 2 } ], "_tags": [], "_topics": [ "ecological-modelling", "landscape-ecosystem-modelling", "spades", "cpp" ], "_stars": 19, "_contributors": [ { "user": "achubaty", "count": 686, "uuid": 3435577 }, { "user": "eliotmcintire", "count": 290, "uuid": 1100507 }, { "user": "ceresbarros", "count": 174, "uuid": 22214224 }, { "user": "ianmseddy", "count": 144, "uuid": 31015280 }, { "user": "tati-micheletti", "count": 5, "uuid": 33500569 } ], "_userbio": { "uuid": 10555025, "type": "organization", "name": "Predictive Ecology Group", "description": "Ecological forecasting models and data" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/LandR" }, "_devurl": "https://github.com/predictiveecology/landr", "_pkgdown": "https://landr.predictiveecology.org", "_searchresults": 14, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/LandR.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_cranurl": false, "_exports": [ ".compareCRS", ".compareRas", ".stack", "addNoPixel2CohortData", "addPixels2CohortData", "adjustAgeToLongevity", "aggregateRasByDT", "asInt", "asInteger", "assert1", "assert2", "assertCohortData", "assertCohortDataAttr", "assertCohortDataERG", "assertColumns", "assertERGs", "assertFireToleranceDif", "assertPixelCohortData", "assertPixelCohortDataValid", "assertPostPartialDist", "assertRepsAllCohortData", "assertRstLCChange", "assertSpeciesEcoregionCohortDataMatch", "assertSpeciesLayers", "assertSpeciesPlotLabels", "assertSpeciesTable", "assertSpeciesTableRaw", "assertSppMaxBMaxANPP", "assertSppVectors", "assertStandAgeMapAttr", "assertUniqueCohortData", "assignLightProb", "biomodEnsembleFrcstWrapper", "biomodEnsembleProjMaps", "biomodEnsembleWrapper", "biomodModelingWrapper", "biomodProjWrapper", "BioSIM_extractPoints", "BioSIM_getMPBSLR", "BioSIM_getWindAnnual", "BioSIM_getWindMonthly", "calc_raster_counts", "calc_raster_stats", "calcSeverityB", "calcSiteShade", "calculateClimateEffect", "CASFRItoSpRasts", "checkSpeciesTraits", "cohortDefinitionCols", "Colors", "columnsForPixelGroups", "convert_SCANFI_LCC_codes", "convertUnwantedLCC", "convertUnwantedLCC2", "defineFlammable", "describeCohortData", "doResprouting", "doSerotiny", "dropTerm", "ecoregionProducer", "equivalentName", "equivalentNameColumn", "extractMaxB", "fasterizeFromSp", "FireDisturbance", "FireDisturbancePM", "fitNLMModels", "gadm_canada", "generatePixelGroups", "genericExtract", "genPGsPostDisturbance", "getSpeciesTable", "getWildfire_NFI", "installBioSIM", "isInt", "LANDISDisp", "lccMapGenerator", "loadCASFRI", "loadkNNSpeciesLayers", "loadkNNSpeciesLayersValidation", "loadSCANFISpeciesLayers", "makeAndCleanInitialCohortData", "makeBiomassMap", "makeCohortDataFiles", "makeDummyEcoregionFiles", "makeDummyEcoregionMap", "makeDummyRawBiomassMap", "makeDummyRstLCC", "makeDummyStandAgeMap", "makeEcoregionDT", "makeEcoregionMap", "makeMinRelativeB", "makePickellStack", "makePixelGroupMap", "makePixelTable", "makeSpeciesEcoregion", "makeVegTypeMap", "minRelativeBDefaults", "modifySpeciesAndSpeciesEcoregionTable", "NAcover2zero", "nonForestedPixels", "overlayLCCs", "overlayStacks", "partialggplotMLL_maxB", "partitionBiomass", "PeatlandThermokarst", "pixelFate", "plantNewCohorts", "plot_raster", "plot_raster_stats", "plotLeadingSpecies", "plotSpatial", "plotVegTransitions", "plotVTM", "prepEcoregions", "prepEcozonesRst", "prepInputs_NTEMS_DominantSpecies", "prepInputs_NTEMS_LCC_FAO", "prepInputs_NTEMS_Nonforest", "prepInputs_SCANFI_LCC_FAO", "prepInputsCanDEM", "prepInputsEcoregion", "prepInputsFireYear", "prepInputsLCC", "prepInputsMainInput", "prepInputsSpecies", "prepInputsSpeciesEcoregion", "prepInputsStandAgeMap", "prepRasterToMatch", "prepRawBiomassMap", "prepSpeciesLayers_CASFRI", "prepSpeciesLayers_ForestInventory", "prepSpeciesLayers_KNN", "prepSpeciesLayers_KNN2011", "prepSpeciesLayers_MBFRI", "prepSpeciesLayers_NTEMS", "prepSpeciesLayers_ONFRI", "prepSpeciesLayers_Pickell", "prepSpeciesLayers_SCANFI", "prepSpeciesTable", "randomStudyArea", "reclass", "replaceAgeInFires", "rescale", "rmMissingCohorts", "scheduleDisturbance", "speciesEcoregionLatestYear", "speciesInStudyArea", "speciesPresentFromKNN", "speciesPresentFromNTEMS", "speciesPresentFromSCANFI", "speciesTableUpdate", "sppColors", "sppEquivCheck", "sppHarmonize", "standAgeMapGenerator", "statsModel", "studyAreaEco", "subsetDT", "sumRastersBySpecies", "uniqueCohortDefinition", "uniqueSpeciesEcoregionDefinition", "updateCohortData", "updateCohortDataPostHarvest", "updateSpeciesTable", "vegTransitions", "vegTypeGenerator", "vegTypeMapGenerator", "vtm2conifdecid", "Ward" ], "_datasets": [ { "name": "sppEquivalencies_CA", "title": "Table of species name equivalencies for Canadian trees", "object": "sppEquivalencies_CA", "class": [ "data.table", "data.frame" ], "fields": [ "LANDIS_test", "LANDIS_traits", "LandR", "KNN", "CASFRI", "Latin_full", "EN_generic_short", "EN_generic_full", "Leading", "Notes", "Boreal", "Broadleaf", "Type", "PSP", "ApproxFBP", "FuelClass", "BC_forestry", "AB_forestry", "SK_forestry", "MB_forestry", "ON_forestry", "QCPSP", "NB_forestry", "NFI", "CanfiCode", "CanfiNote", "NTEMS_Species_Code", "CBM_speciesID", "SCANFI", "colorHex" ], "rows": 204, "table": true, "tojson": true } ], "_help": [ { "page": "LandR-package", "title": "'LandR' package", "topics": [ "LandR-package", "LandR" ] }, { "page": "compare", "title": "Compare raster properties", "topics": [ ".compareCRS", ".compareRas" ] }, { "page": "dot-fitNLMwCovariates", "title": "Fit non-linear growth model under various starting conditions", "topics": [ ".fitNLMwCovariates" ] }, { "page": "dot-getMaxBCoefs", "title": "Get maximum biomass coefficient names", "topics": [ ".getMaxBCoefs" ] }, { "page": "dot-interpolateLightProb", "title": "Find interpolated value of light probability", "topics": [ ".interpolateLightProb" ] }, { "page": "dot-MLLMaxBPartialPlotData", "title": "Prepare data for model plotting", "topics": [ ".MLLMaxBPartialPlotData" ] }, { "page": "dot-MLLMaxBplotData", "title": "Prepare data for model plotting", "topics": [ ".MLLMaxBplotData" ] }, { "page": "rasterTerraHelpers", "title": "Set NA values in 'Raster' or 'SpatRaster'", "topics": [ ".NAvalueFlag", ".projectExtent", ".stack", "asInt", "isInt", "reclass" ] }, { "page": "addNoPixel2CohortData", "title": "Add number of pixels per 'pixelGroup' and add it has a new column to 'cohortData'", "topics": [ "addNoPixel2CohortData" ] }, { "page": "addPixels2CohortData", "title": "Generate 'cohortData' table per pixel:", "topics": [ "addPixels2CohortData" ] }, { "page": "adjustAgeToLongevity", "title": "Reduces the age of cohorts that exceed their longevity x adjustmentFactor", "topics": [ "adjustAgeToLongevity" ] }, { "page": "aggregateRasByDT", "title": "Aggregate a raster", "topics": [ "aggregateRasByDT" ] }, { "page": "asInteger", "title": "Convert numeric values to rounded integers", "topics": [ "asInteger" ] }, { "page": "assertions", "title": "Assertions", "topics": [ "assert1", "assert2", "assertCohortData", "assertCohortDataAttr", "assertCohortDataERG", "assertColumns", "assertERGs", "assertFireToleranceDif", "assertPixelCohortData", "assertPixelCohortDataValid", "assertRepsAllCohortData", "assertRstLCChange", "assertSpeciesEcoregionCohortDataMatch", "assertSpeciesLayers", "assertSpeciesPlotLabels", "assertSpeciesTable", "assertSpeciesTableRaw", "assertSppMaxBMaxANPP", "assertSppVectors", "assertStandAgeMapAttr", "assertUniqueCohortData" ] }, { "page": "assertPostPartialDist", "title": "Assert post-fire disturbance mortality and regeneration", "topics": [ "assertPostPartialDist" ] }, { "page": "assignLightProb", "title": "Assign light probability", "topics": [ "assignLightProb" ] }, { "page": "biomodEnsembleFrcstWrapper", "title": "Simple wrapper around 'biomod2::BIOMOD_EnsembleForecasting()'", "topics": [ "biomodEnsembleFrcstWrapper" ] }, { "page": "biomodEnsembleProjMaps", "title": "Make maps from 'BIOMOD_EnsembleForecasting()' results", "topics": [ "biomodEnsembleProjMaps" ] }, { "page": "biomodEnsembleWrapper", "title": "BIOMOD_EnsembleModeling wrapper", "topics": [ "biomodEnsembleWrapper" ] }, { "page": "biomodModelingWrapper", "title": "BIOMOD_Modeling wrapper", "topics": [ "biomodModelingWrapper" ] }, { "page": "biomodProjWrapper", "title": "BIOMOD_Projection wrapper", "topics": [ "biomodProjWrapper" ] }, { "page": "BioSIM_extractPoints", "title": "Extract point locations from DEM raster to pass to 'BioSIM' functions", "topics": [ "BioSIM_extractPoints" ] }, { "page": "BioSIM_getMPBSLR", "title": "Get annual historic and projected MPB climate suitability maps from 'BioSIM'", "topics": [ "BioSIM_getMPBSLR" ] }, { "page": "BioSIM_getWindAnnual", "title": "Get annual historic and projected wind maps from 'BioSIM'", "topics": [ "BioSIM_getWindAnnual" ] }, { "page": "BioSIM_getWindMonthly", "title": "Get monthly historic and projected wind maps from 'BioSIM'", "topics": [ "BioSIM_getWindMonthly" ] }, { "page": "raster_stats", "title": "Raster summary statistics and maps by polygon", "topics": [ "calc_raster_counts", "calc_raster_stats", "plot_raster_stats" ] }, { "page": "calcSeverityB", "title": "Calculate fire severity", "topics": [ "calcSeverityB" ] }, { "page": "calcSiteShade", "title": "Calculate site shade", "topics": [ "calcSiteShade" ] }, { "page": "calculateClimateEffect", "title": "Null climate effect", "topics": [ "calculateClimateEffect" ] }, { "page": "CASFRItoSpRasts", "title": "'CASFRItoSpRasts'", "topics": [ "CASFRItoSpRasts" ] }, { "page": "checkSpeciesTraits", "title": "Check if all species in have trait values", "topics": [ "checkSpeciesTraits" ] }, { "page": "cohortDefinitionCols", "title": "Default columns that define cohorts", "topics": [ "cohortDefinitionCols" ] }, { "page": "Colors", "title": "Helper for setting Raster or 'SpatRaster' colors", "topics": [ "Colors", "Colours" ] }, { "page": "columnsForPixelGroups", "title": "Default columns that define pixel groups", "topics": [ "columnsForPixelGroups" ] }, { "page": "convert_SCANFI_LCC_codes", "title": "Convert SCANFI Landcover layers from 1-8 codes to typical Canada LCC codes (0-230)", "topics": [ "convert_SCANFI_LCC_codes" ] }, { "page": "convertUnwantedLCC", "title": "Convert Land Cover Classes (LCC) to another value in its neighbourhood", "topics": [ "convertUnwantedLCC" ] }, { "page": "convertUnwantedLCC2", "title": "Convert Land Cover Classes (LCC) to another value in its neighbourhood", "topics": [ "convertUnwantedLCC2" ] }, { "page": "defineFlammable", "title": "Define flammability map", "topics": [ "defineFlammable" ] }, { "page": "describeCohortData", "title": "Summary for 'cohortData'", "topics": [ "describeCohortData" ] }, { "page": "doResprouting", "title": "Activate resprouting after a (fire) disturbance", "topics": [ "doResprouting" ] }, { "page": "doSerotiny", "title": "Activate serotiny after a (fire) disturbance", "topics": [ "doSerotiny" ] }, { "page": "dropTerm", "title": "Drop factor term including interactions from a model formula", "topics": [ "dropTerm" ] }, { "page": "ecoregionProducer", "title": "Make 'ecoregionMap' and 'ecoregion' table", "topics": [ "ecoregionProducer" ] }, { "page": "equivalentName", "title": "Return equivalent name from a 'data.frame' of equivalencies", "topics": [ "equivalentName", "equivalentNameColumn" ] }, { "page": "extractMaxB", "title": "Maximum biomass estimator", "topics": [ "extractMaxB" ] }, { "page": "fasterizeFromSp", "title": "Rasterize polygons using 'fasterize'", "topics": [ "fasterizeFromSp" ] }, { "page": "Disturbances", "title": "Disturbance functions", "topics": [ "FireDisturbance", "FireDisturbancePM", "PeatlandThermokarst" ] }, { "page": "fitNLMModels", "title": "FUNCTIONS TO FIT NON-LINEAR MODELS TO ESTIMATE MAXB Wrapper function to fit non-linear growth model per species.", "topics": [ "fitNLMModels" ] }, { "page": "gadm_canada", "title": "Canada administrative boundaries", "topics": [ "gadm_canada" ] }, { "page": "generatePixelGroups", "title": "Add the correct 'pixelGroups' to a 'pixelDataTable' object", "topics": [ "generatePixelGroups" ] }, { "page": "genericExtract", "title": "Generic extract points", "topics": [ "genericExtract" ] }, { "page": "genPGsPostDisturbance", "title": "Re-generate new 'pixelGroup's in partially disturbed pixels.", "topics": [ "genPGsPostDisturbance" ] }, { "page": "speciesTable", "title": "Download and prepare a species traits table for use with 'Biomass_core' module", "topics": [ "getSpeciesTable", "prepSpeciesTable" ] }, { "page": "getWildfire_NFI", "title": "Download and prepare raster fire data from NFI", "topics": [ "getWildfire_NFI" ] }, { "page": "ggplotMLL_maxB", "title": "Plot estimated maximum biomass by age", "topics": [ "ggplotMLL_maxB" ] }, { "page": "installBioSIM", "title": "Install 'BioSIM' to retrieve climate and other projections using 'BioSIM'", "topics": [ "installBioSIM" ] }, { "page": "LANDISDisp", "title": "Simulate a LANDIS-II dispersal process on a landscape.", "topics": [ "LANDISDisp" ] }, { "page": "lccMapGenerator", "title": "Calculate landcover classes based on species cohorts", "topics": [ "lccMapGenerator" ] }, { "page": "loadCASFRI", "title": "Load CASFRI data", "topics": [ "loadCASFRI" ] }, { "page": "loadkNNSpeciesLayers", "title": "Load kNN species layers from online data repository", "topics": [ "loadkNNSpeciesLayers" ] }, { "page": "loadSCANFISpeciesLayers", "title": "Load SCANFI species layers from online data repository", "topics": [ "loadSCANFISpeciesLayers" ] }, { "page": "makeAndCleanInitialCohortData", "title": "Generate initial 'cohortData' table", "topics": [ "makeAndCleanInitialCohortData" ] }, { "page": "makeBiomassMap", "title": "Create 'biomassMap'", "topics": [ "makeBiomassMap" ] }, { "page": "makeCohortDataFiles", "title": "Make the 'cohortData' table, while modifying the temporary 'pixelCohortData' that will be used to prepare other files.", "topics": [ "makeCohortDataFiles" ] }, { "page": "dummy-inputs", "title": "Create dummy inputs for test simulations", "topics": [ "makeDummyEcoregionFiles", "makeDummyEcoregionMap", "makeDummyRawBiomassMap", "makeDummyRstLCC", "makeDummyStandAgeMap" ] }, { "page": "makeEcoregionDT", "title": "Make the 'ecoregion' table", "topics": [ "makeEcoregionDT" ] }, { "page": "makeEcoregionMap", "title": "Make the 'ecoregionMap' raster", "topics": [ "makeEcoregionMap" ] }, { "page": "makeMinRelativeB", "title": "Create 'minRelativeB' table", "topics": [ "makeMinRelativeB" ] }, { "page": "makePickellStack", "title": "'makePickellStack'", "topics": [ "makePickellStack" ] }, { "page": "makePixelGroupMap", "title": "Create 'makePixelGroupMap'", "topics": [ "makePixelGroupMap" ] }, { "page": "makePixelTable", "title": "Make 'pixelTable' from biomass, age, land-cover and species cover data", "topics": [ "makePixelTable" ] }, { "page": "makeSpeciesEcoregion", "title": "Create 'speciesEcoregion'", "topics": [ "makeSpeciesEcoregion" ] }, { "page": "LandR-deprecated", "title": "Make a vegetation type map from a stack of species abundances", "topics": [ "loadkNNSpeciesLayersValidation", "makeVegTypeMap", "prepSpeciesLayers_KNN2011" ] }, { "page": "minRelativeBDefaults", "title": "minRelativeB defaults for Western Boreal Forest Canada", "topics": [ "minRelativeBDefaults" ] }, { "page": "modifySpeciesAndSpeciesEcoregionTable", "title": "Update 'species' and 'speciesEcoregion' tables", "topics": [ "modifySpeciesAndSpeciesEcoregionTable" ] }, { "page": "NAcover2zero", "title": "Convert 'NA' values in 'speciesLayers' to zeros", "topics": [ "NAcover2zero" ] }, { "page": "nonForestedPixels", "title": "Assess non-forested pixels based on species cover data and land-cover", "topics": [ "nonForestedPixels" ] }, { "page": "overlayLCCs", "title": "Overlay different LCC data sources", "topics": [ "overlayLCCs" ] }, { "page": "overlayStacks", "title": "Overlay layers within raster stacks", "topics": [ "overlayStacks" ] }, { "page": "partialggplotMLL_maxB", "title": "Partial effect plots of maximum biomass estimates by age", "topics": [ "partialggplotMLL_maxB" ] }, { "page": "partitionBiomass", "title": "Partition biomass according to cover estimates", "topics": [ "partitionBiomass" ] }, { "page": "pixelFate", "title": "Create or amend data to a 'pixelFateDT' object", "topics": [ "pixelFate" ] }, { "page": "plantNewCohorts", "title": "Create new cohorts based on provenance table with unique 'pixelGroup' and add to 'cohortData'", "topics": [ "plantNewCohorts" ] }, { "page": "plot_raster", "title": "Plot raster objects using ggplot", "topics": [ "plot_raster" ] }, { "page": "plotLeadingSpecies", "title": "Leading species plots", "topics": [ "plotLeadingSpecies" ] }, { "page": "plotSpatial", "title": "Create a 'ggplot' of a raster or 'sf' object.", "topics": [ "plotSpatial" ] }, { "page": "plotVTM", "title": "Summary plots of leading vegetation types", "topics": [ "plotVTM" ] }, { "page": "prepEcoregions", "title": "Prepare ecoregions objects", "topics": [ "prepEcoregions" ] }, { "page": "prepEcozonesRst", "title": "Prepare ecozones raster", "topics": [ "prepEcozonesRst" ] }, { "page": "prepInputs_NTEMS_DominantSpecies", "title": "Obtain an Dominant species layer for a given year from NTEMS", "topics": [ "prepInputs_NTEMS_DominantSpecies" ] }, { "page": "prepInputs_NTEMS_LCC_FAO", "title": "Obtain an LCC layer for a given year from NTEMS, with forest matching the FAO definition", "topics": [ "prepInputs_NTEMS_LCC_FAO" ] }, { "page": "prepInputs_NTEMS_Nonforest", "title": "Reclassify non-flammable pixels that become flammable - herbaceous or shrubby - vegetation", "topics": [ "prepInputs_NTEMS_Nonforest" ] }, { "page": "prepInputs_SCANFI_LCC_FAO", "title": "Obtain an LCC layer for a given year from SCANFI, with forest matching the FAO definition", "topics": [ "prepInputs_SCANFI_LCC_FAO" ] }, { "page": "prepInputsCanDEM", "title": "Get digital elevation map of Canada", "topics": [ "prepInputsCanDEM" ] }, { "page": "prepInputsEcoregion", "title": "Prepare ecoregion table", "topics": [ "prepInputsEcoregion" ] }, { "page": "prepInputsFireYear", "title": "Create a raster of fire perimeters", "topics": [ "prepInputsFireYear" ] }, { "page": "prepInputsLCC", "title": "Simple 'prepInputs' for Canadian LCC data", "topics": [ "prepInputsLCC" ] }, { "page": "prepInputsSpecies", "title": "Download and prepare a species traits table for use with 'Biomass_core' module", "topics": [ "prepInputsMainInput", "prepInputsSpecies" ] }, { "page": "prepInputsSpeciesEcoregion", "title": "Prepare species ecoregion table", "topics": [ "prepInputsSpeciesEcoregion" ] }, { "page": "prepInputsStandAgeMap", "title": "Create 'standAgeMap'", "topics": [ "prepInputsStandAgeMap" ] }, { "page": "prepRasterToMatch", "title": "Create 'rasterToMatch' and 'rasterToMatchLarge'", "topics": [ "prepRasterToMatch" ] }, { "page": "prepRawBiomassMap", "title": "Create 'rawBiomassMap'", "topics": [ "prepRawBiomassMap" ] }, { "page": "prepSpeciesLayers", "title": "Prepare species layers", "topics": [ "prepSpeciesLayers_CASFRI", "prepSpeciesLayers_ForestInventory", "prepSpeciesLayers_KNN", "prepSpeciesLayers_MBFRI", "prepSpeciesLayers_NTEMS", "prepSpeciesLayers_ONFRI", "prepSpeciesLayers_Pickell", "prepSpeciesLayers_SCANFI" ] }, { "page": "randomStudyArea", "title": "Create default study areas for use with LandR modules", "topics": [ "randomStudyArea" ] }, { "page": "replaceAgeInFires", "title": "Replace stand age with time since last fire", "topics": [ "replaceAgeInFires" ] }, { "page": "rescale", "title": "Rescale function (as in 'scales::rescale')", "topics": [ "rescale" ] }, { "page": "rmMissingCohorts", "title": "Remove missing cohorts from 'cohortData' based on 'pixelGroupMap'", "topics": [ "rmMissingCohorts" ] }, { "page": "scheduleDisturbance", "title": "Test whether disturbance should be scheduled", "topics": [ "scheduleDisturbance" ] }, { "page": "speciesEcoregionLatestYear", "title": "Pull out the values from 'speciesEcoregion' table for current time", "topics": [ "speciesEcoregionLatestYear" ] }, { "page": "speciesEcoregionStack", "title": "Create Stacks of the 'speciesEcoregion' content", "topics": [ "speciesEcoregionStack" ] }, { "page": "speciesInStudyArea", "title": "Get species list in a given study area for a forest in Canada", "topics": [ "speciesInStudyArea" ] }, { "page": "speciesPresentFromKNN", "title": "Make a species factor raster from KNN", "topics": [ "speciesPresentFromKNN" ] }, { "page": "speciesPresentFromNTEMS", "title": "Make a species factor raster based on NTEMS Data", "topics": [ "speciesPresentFromNTEMS" ] }, { "page": "speciesPresentFromSCANFI", "title": "Make a species factor raster based on SCANFI Data", "topics": [ "speciesPresentFromSCANFI" ] }, { "page": "speciesTableUpdate", "title": "Change species table of parameters/traits", "topics": [ "speciesTableUpdate" ] }, { "page": "sppColors", "title": "Create species colour vector from a 'sppEquiv' table", "topics": [ "sppColors", "sppColours" ] }, { "page": "sppEquivalencies_CA", "title": "Table of species name equivalencies for Canadian trees", "topics": [ "sppEquivalencies_CA" ] }, { "page": "sppEquivCheck", "title": "Check and expand 'sppEquiv'", "topics": [ "sppEquivCheck" ] }, { "page": "sppHarmonize", "title": "Harmonize the three components that bring species into Biomass_** modules", "topics": [ "sppHarmonize" ] }, { "page": "standAgeMapGenerator", "title": "Produce stand age map based on 'cohortData'", "topics": [ "standAgeMapGenerator" ] }, { "page": "statsModel", "title": "The generic statistical model to run ('lmer' or 'glmer')", "topics": [ "statsModel" ] }, { "page": "studyAreaEco", "title": "Ecological boundaries within a study area", "topics": [ "studyAreaEco" ] }, { "page": "subsetDT", "title": "Subset a 'data.table' with random subsampling within 'by' groups", "topics": [ "subsetDT" ] }, { "page": "sumRastersBySpecies", "title": "Function to sum rasters of species layers", "topics": [ "sumRastersBySpecies" ] }, { "page": "uniqueDefinitions", "title": "The columns in a 'cohortData' that define \"unique\"", "topics": [ "uniqueCohortDefinition", "uniqueSpeciesEcoregionDefinition" ] }, { "page": "updateCohortData", "title": "Add cohorts to 'cohortData' and 'pixelGroupMap'", "topics": [ ".initiateNewCohorts", "updateCohortData" ] }, { "page": "updateCohortDataPostHarvest", "title": "Add cohorts to 'cohortData' and 'pixelGroupMap'", "topics": [ "updateCohortDataPostHarvest" ] }, { "page": "updateSpeciesTable", "title": "Customize species trait table values", "topics": [ "updateSpeciesTable" ] }, { "page": "vegTypeGenerator", "title": "Generate and add vegetation type column to 'cohortData'", "topics": [ "vegTypeGenerator" ] }, { "page": "vegTypeMapGenerator", "title": "Generate vegetation type map", "topics": [ "vegTypeMapGenerator", "vegTypeMapGenerator.data.table", "vegTypeMapGenerator.default" ] }, { "page": "vegetation-transitions", "title": "Create a summaries of vegetation type transitions", "topics": [ "plotVegTransitions", "vegTransitions", "vtm2conifdecid" ] }, { "page": "WardKernel", "title": "Ward Dispersal Kernel - vectorized, optimized for speed", "topics": [ "Ward", "WardKernel" ] } ], "_readme": "https://github.com/PredictiveEcology/LandR/raw/development/README.md", "_rundeps": [ "abind", "amc", "askpass", "backports", "base64enc", "bitops", "boot", "callr", "checkmate", "class", "classInt", "cli", "cpp11", "crayon", "curl", "data.table", "DBI", "digest", "dismo", "dplyr", "e1071", "farver", "fasterize", "filelock", "Formula", "fpCompare", "fs", "generics", "ggplot2", "ggspatial", "glue", "gridExtra", "gtable", "hms", "httr", "httr2", "insight", "isoband", "jpeg", "jsonlite", "KernSmooth", "labeling", "lattice", "lifecycle", "lme4", "lobstr", "magrittr", "MASS", "Matrix", "mime", "minqa", "MuMIn", "nlme", "nloptr", "openssl", "otel", "pak", "parallelly", "patchwork", "pemisc", "peutils", "pillar", "pkgconfig", "png", "prettyunits", "processx", "progress", "proxy", "ps", "purrr", "quickPlot", "R6", "rappdirs", "raster", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "RCurl", "Rdpack", "reformulas", "reproducible", "Require", "rlang", "rosm", "s2", "S7", "scales", "sf", "sp", "SpaDES.tools", "stringi", "stringr", "sys", "terra", "tibble", "tidyr", "tidyselect", "tidyterra", "units", "utf8", "vctrs", "viridis", "viridisLite", "withr", "wk" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_score": 6.171515835568646, "_indexed": true, "_nocasepkg": "landr", "_universes": [ "predictiveecology" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.2.0.9002", "date": "2026-06-06T21:21:26.000Z", "distro": "noble", "arch": "aarch64", "commit": "f9d7d39d2f452766d2feff5b0e7037e28cb79ef6", "fileid": "e55c1768a970a58baab09e7a5a5f8012573e06f3d39528ee3f7813e9a7aab688", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/predictiveecology/actions/runs/27073981787" }, { "r": "4.7.0", "os": "linux", "version": "1.2.0.9002", "date": "2026-06-06T21:21:39.000Z", "distro": "noble", "arch": "x86_64", "commit": "f9d7d39d2f452766d2feff5b0e7037e28cb79ef6", "fileid": "e30267d163969c96311ab81fd3ba3d1cac969183bb3d474479c3150a8944a7f8", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/predictiveecology/actions/runs/27073981787" }, { "r": "4.6.0", "os": "linux", "version": "1.2.0.9002", "date": "2026-06-06T21:21:44.000Z", "distro": "noble", "arch": "aarch64", "commit": "f9d7d39d2f452766d2feff5b0e7037e28cb79ef6", "fileid": "c4486b80be4743a84fe86f86d05bc98cb1acb95a108c86fbff0a9095169fa319", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/predictiveecology/actions/runs/27073981787" }, { "r": "4.6.0", "os": "linux", "version": "1.2.0.9002", "date": "2026-06-06T21:21:12.000Z", "distro": "noble", "arch": "x86_64", "commit": "f9d7d39d2f452766d2feff5b0e7037e28cb79ef6", "fileid": "8298d8563224cd889968cb920f846b7b4d3e02bbb84c484383d26e95362b5f27", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/predictiveecology/actions/runs/27073981787" }, { "r": "4.5.3", "os": "mac", "version": "1.2.0.9002", "date": "2026-06-06T21:20:08.000Z", "arch": "aarch64", "commit": "f9d7d39d2f452766d2feff5b0e7037e28cb79ef6", "fileid": "54e07f54dbb496022ebe57201d3904e8077688800b66aba323ac9db32bda2d90", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/predictiveecology/actions/runs/27073981787" }, { "r": "4.5.3", "os": "mac", "version": "1.2.0.9002", "date": "2026-06-06T21:21:28.000Z", "arch": "x86_64", "commit": "f9d7d39d2f452766d2feff5b0e7037e28cb79ef6", "fileid": "1674e8d23e2c058cd5fe2ad65a13ea2e2c2fda9f8a702e65fafff20ba77fc1da", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/predictiveecology/actions/runs/27073981787" }, { "r": "4.6.0", "os": "mac", "version": "1.2.0.9002", "date": "2026-06-06T21:19:58.000Z", "arch": "aarch64", "commit": "f9d7d39d2f452766d2feff5b0e7037e28cb79ef6", "fileid": "c1abdaf46c478cbd2b9c0c624ebe970520d18816e8cb051f42b8c69354794f94", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/predictiveecology/actions/runs/27073981787" }, { "r": "4.6.0", "os": "mac", "version": "1.2.0.9002", "date": "2026-06-06T21:21:21.000Z", "arch": "x86_64", "commit": "f9d7d39d2f452766d2feff5b0e7037e28cb79ef6", "fileid": "4e3de38034a5688cb3f6bb1e35a8d298eac723dcc5bee36e6ce0599e0d86efcd", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/predictiveecology/actions/runs/27073981787" }, { "r": "4.6.0", "os": "wasm", "version": "1.2.0.9002", "date": "2026-06-06T21:21:20.000Z", "arch": "emscripten", "commit": "f9d7d39d2f452766d2feff5b0e7037e28cb79ef6", "fileid": "c765dc324244db063f26b5bc6e4fa8c6d84deca816bdf68b89e7cf381b023f2b", "status": "success", "buildurl": "https://github.com/r-universe/predictiveecology/actions/runs/27073981787" }, { "r": "4.7.0", "os": "win", "version": "1.2.0.9002", "date": "2026-06-06T21:19:43.000Z", "arch": "x86_64", "commit": "f9d7d39d2f452766d2feff5b0e7037e28cb79ef6", "fileid": "8cefdf84aced142eb11772f940d5d578bc99d04a1eebf9d368528b2dc7b09246", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/predictiveecology/actions/runs/27073981787" }, { "r": "4.5.3", "os": "win", "version": "1.2.0.9002", "date": "2026-06-06T21:19:36.000Z", "arch": "x86_64", "commit": "f9d7d39d2f452766d2feff5b0e7037e28cb79ef6", "fileid": "8615242eaae363b7b7bea3228956a043a84cdbe4202b3bb6efa390b6e2b48e9a", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/predictiveecology/actions/runs/27073981787" }, { "r": "4.6.0", "os": "win", "version": "1.2.0.9002", "date": "2026-06-06T21:19:41.000Z", "arch": "x86_64", "commit": "f9d7d39d2f452766d2feff5b0e7037e28cb79ef6", "fileid": "38817e61885342112b00d9707b010e3ef0d300bbb7fa4f8beaf107cad7b8bf5c", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/predictiveecology/actions/runs/27073981787" } ] }