{ "_id": "6a21d59acd65a98ecbd407ae", "Package": "PSPclean", "Type": "Package", "Title": "Sources and standardizes permanent sample plot data", "Version": "1.0.0.9006", "Authors@R": "c(\nperson(\"Ian M S\", \"Eddy\", email = \"ian.eddy@nrcan.rncan.gc.ca\",\nrole = c(\"aut\", \"cre\")),\nperson(\"Alex M\", \"Chubaty\", email = \"achubaty@for-cast.ca\",\nrole = c(\"ctb\"))\n)", "Description": "Converts all data into two keyed tables. One is for tree\nmeasurements, and the other is for plot data. Some arguments\nexist for handling disturbance agents.", "Encoding": "UTF-8", "Language": "en-CA", "License": "GPL-3", "Remotes": [ "PredictiveEcology/LandR@development" ], "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nmake default-jdk libicu-dev libjpeg-dev libpng-dev libuv1-dev\nlibssl-dev libproj-dev libsqlite3-dev libudunits2-dev", "Repository": "https://predictiveecology.r-universe.dev", "Date/Publication": "2026-04-10 21:06:41 UTC", "RemoteUrl": "https://github.com/ianmseddy/PSPclean", "RemoteRef": "development", "RemoteSha": "b878a1ae39a0a834aa5ccdcb4d96be1fa7c4a8d9", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-04 19:39:31 UTC", "User": "root" }, "Author": "Ian M S Eddy [aut, cre],\nAlex M Chubaty [ctb]", "Maintainer": "Ian M S Eddy ", "MD5sum": "242dbcc6e5ffe15583ba68add08c2f7a", "_user": "predictiveecology", "_type": "src", "_file": "PSPclean_1.0.0.9006.tar.gz", "_fileid": "59ac4987a102086d7fd3fc7a7adaf3b8ea8d213c5523ee0b81dbc1098568e633", "_filesize": 166430, "_sha256": "59ac4987a102086d7fd3fc7a7adaf3b8ea8d213c5523ee0b81dbc1098568e633", "_created": "2026-06-04T19:39:31.000Z", "_published": "2026-06-04T19:44:26.952Z", "_distro": "noble", "_jobs": [ { "job": 79600107631, "time": 248, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "7421358862" }, { "job": 79600107591, "time": 225, "config": "linux-release-x86_64", "r": "4.6.0", "check": "ERROR", "artifact": "7421350359" }, { "job": 79600107639, "time": 155, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "ERROR", "artifact": "7421324897" }, { "job": 79600107645, "time": 157, "config": "macos-release-arm64", "r": "4.6.0", "check": "ERROR", "artifact": "7421325133" }, { "job": 79599285403, "time": 274, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7421269721" }, { "job": 79600107636, "time": 164, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7421328432" }, { "job": 79600107650, "time": 163, "config": "windows-devel", "r": "4.7.0", "check": "ERROR", "artifact": "7421328196" }, { "job": 79600107675, "time": 196, "config": "windows-oldrel", "r": "4.5.3", "check": "ERROR", "artifact": "7421339816" }, { "job": 79600107662, "time": 183, "config": "windows-release", "r": "4.6.0", "check": "ERROR", "artifact": "7421335157" } ], "_buildurl": "https://github.com/r-universe/predictiveecology/actions/runs/26974878437", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/ianmseddy/PSPclean", "_commit": { "id": "b878a1ae39a0a834aa5ccdcb4d96be1fa7c4a8d9", "author": "Ian Eddy ", "committer": "Ian Eddy ", "message": "modify tests - remove redundant ones\n", "time": 1775855201 }, "_maintainer": { "name": "Ian M S Eddy", "email": "ian.eddy@nrcan.rncan.gc.ca" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.2", "role": "Depends" }, { "package": "bit64", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "LandR", "version": ">= 1.1.5.9088", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "reproducible", "version": ">= 2.0.3", "role": "Imports" }, { "package": "sf", "role": "Imports" }, { "package": "terra", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "withr", "role": "Suggests" }, { "package": "googledrive", "role": "Suggests" } ], "_owner": "ianmseddy", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-32", "n": 1 }, { "week": "2025-43", "n": 4 }, { "week": "2025-46", "n": 1 }, { "week": "2025-47", "n": 4 }, { "week": "2025-48", "n": 4 }, { "week": "2025-49", "n": 6 }, { "week": "2025-50", "n": 3 }, { "week": "2026-04", "n": 1 }, { "week": "2026-10", "n": 11 }, { "week": "2026-11", "n": 7 }, { "week": "2026-12", "n": 3 }, { "week": "2026-15", "n": 2 } ], "_tags": [], "_stars": 0, "_contributors": [ { "user": "ianmseddy", "count": 125, "uuid": 31015280 }, { "user": "pkalanta", "count": 49, "uuid": 113637920 }, { "user": "achubaty", "count": 24, "uuid": 3435577 }, { "user": "ceresbarros", "count": 2, "uuid": 22214224 } ], "_userbio": { "uuid": 10555025, "type": "organization", "name": "Predictive Ecology Group", "description": "Ecological forecasting models and data" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PSPclean" }, "_devurl": "https://github.com/ianmseddy/pspclean", "_searchresults": 1, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/PSPclean.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_cranurl": false, "_exports": [ "assessTreeNumberConsistency", "classify_tree_status", "dataPurification_ABPSP", "dataPurification_BCPSP", "dataPurification_NBPSP", "dataPurification_NFIPSP", "dataPurification_ONPSP", "dataPurification_QCPSP", "dataPurification_SKPSP", "dataPurification_SKTSP_Mistik", "detect_dbh_outliers", "geoCleanPSP", "getPSP", "prepInputsAlbertaPSP", "prepInputsBCPSP", "prepInputsNBPSP", "prepInputsNFIPSP", "prepInputsOntarioPSP", "prepInputsQCPSP", "prepInputsSaskatchwanPSP", "prepInputsSaskatchwanTSP", "prepPSP_climateNA", "process_dbh_issues", "standardizeSpeciesNames", "treenum_to_multiplePSP" ], "_help": [ { "page": "assessTreeNumberConsistency", "title": "Analyze Regeneration Proportion and Tree DBH Growth", "topics": [ "assessTreeNumberConsistency" ] }, { "page": "classify_tree_status", "title": "Classify Tree Status Based on Measurement History", "topics": [ "classify_tree_status" ] }, { "page": "dataPurification_ABPSP", "title": "Standardize and Treat the Alberta PSP Data", "topics": [ "dataPurification_ABPSP" ] }, { "page": "dataPurification_BCPSP", "title": "#' Standardize and Treat the BC PSP Data", "topics": [ "dataPurification_BCPSP" ] }, { "page": "dataPurification_NBPSP", "title": "Standardize and Treat the New Brunswick PSP Data", "topics": [ "dataPurification_NBPSP" ] }, { "page": "dataPurification_NFIPSP", "title": "Standardize and Treat the NFI PSP Data", "topics": [ "dataPurification_NFIPSP" ] }, { "page": "dataPurification_ONPSP", "title": "#' Standardize and Treat the Ontario PSP Data", "topics": [ "dataPurification_ONPSP" ] }, { "page": "dataPurification_QCPSP", "title": "Standardize and Treat the Quebec PSP Data", "topics": [ "dataPurification_QCPSP" ] }, { "page": "dataPurification_SKPSP", "title": "Standardize and Treat the Saskatchewan PSP Data", "topics": [ "dataPurification_SKPSP" ] }, { "page": "dataPurification_SKTSP_Mistik", "title": "standardize and treat the Saskatchewan Mistik temporary sample plot data This function will be deprecated", "topics": [ "dataPurification_SKTSP_Mistik" ] }, { "page": "detect_dbh_outliers", "title": "Detect and flag DBH outliers using z-scores by plot", "topics": [ "detect_dbh_outliers" ] }, { "page": "geoCleanPSP", "title": "convert plot location data to long/lat and output in a sf object", "topics": [ "geoCleanPSP" ] }, { "page": "getPSP", "title": "return a merged PSP object from a vector of data sources", "topics": [ "getPSP" ] }, { "page": "prepInputsAlbertaPSP", "title": "source the Alberta PSP data", "topics": [ "prepInputsAlbertaPSP" ] }, { "page": "prepInputsBCPSP", "title": "Source the BC PSP data", "topics": [ "prepInputsBCPSP" ] }, { "page": "prepInputsNBPSP", "title": "retrieve the New Brunswick PSP raw data", "topics": [ "prepInputsNBPSP" ] }, { "page": "prepInputsNFIPSP", "title": "source the NFI PSP data", "topics": [ "prepInputsNFIPSP" ] }, { "page": "prepInputsOntarioPSP", "title": "retrieve preprocessed Ontario PSP and PGP data", "topics": [ "prepInputsOntarioPSP" ] }, { "page": "prepInputsQCPSP", "title": "retrieve the Quebec PSP raw data", "topics": [ "prepInputsQCPSP" ] }, { "page": "prepInputsSaskatchwanPSP", "title": "source the Saskatchewan PSP data", "topics": [ "prepInputsSaskatchwanPSP" ] }, { "page": "prepInputsSaskatchwanTSP", "title": "source the Saskatchewan PSP data", "topics": [ "prepInputsSaskatchwanTSP" ] }, { "page": "prepPSP_climateNA", "title": "standardize and treat the BC PSP data", "topics": [ "prepPSP_climateNA" ] }, { "page": "process_dbh_issues", "title": "Process Implausible DBH Changes Across Measurement Years", "topics": [ "process_dbh_issues" ] }, { "page": "standardizeSpeciesNames", "title": "standardize the species names in a given PSP measurement data.table", "topics": [ "standardizeSpeciesNames" ] }, { "page": "treenum_to_multiplePSP", "title": "Identify Tree Numbers Linked to Multiple Species Within a Plot", "topics": [ "treenum_to_multiplePSP" ] } ], "_readme": "https://github.com/ianmseddy/PSPclean/raw/development/README.md", "_rundeps": [ "abind", "amc", "askpass", "backports", "base64enc", "bit", "bit64", "bitops", "boot", "callr", "checkmate", "class", "classInt", "cli", "cpp11", "crayon", "curl", "data.table", "DBI", "digest", "dismo", "dplyr", "e1071", "farver", "fasterize", "filelock", "Formula", "fpCompare", "fs", "generics", "ggplot2", "ggspatial", "glue", "gridExtra", "gtable", "hms", "httr", "httr2", "insight", "isoband", "jpeg", "jsonlite", "KernSmooth", "labeling", "LandR", "lattice", "lifecycle", "lme4", "lobstr", "magrittr", "MASS", "Matrix", "mime", "minqa", "MuMIn", "nlme", "nloptr", "openssl", "pak", "parallelly", "patchwork", "pemisc", "peutils", "pillar", "pkgconfig", "png", "prettyunits", "processx", "progress", "proxy", "ps", "purrr", "quickPlot", "R6", "rappdirs", "raster", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "RCurl", "Rdpack", "reformulas", "reproducible", "Require", "rlang", "rosm", "s2", "S7", "scales", "sf", "sp", "SpaDES.tools", "stringi", "stringr", "sys", "terra", "tibble", "tidyr", "tidyselect", "tidyterra", "units", "utf8", "vctrs", "viridis", "viridisLite", "withr", "wk" ], "_score": 3.2552725051033065, "_indexed": false, "_nocasepkg": "pspclean", "_universes": [ "predictiveecology" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.0.9006", "date": "2026-06-04T19:42:32.000Z", "distro": "noble", "commit": "b878a1ae39a0a834aa5ccdcb4d96be1fa7c4a8d9", "fileid": "6255afc43c50582a6ef4eeed2d045ab0b4665c3688a7ac2f330e73c261cc6c8d", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/predictiveecology/actions/runs/26974878437" }, { "r": "4.6.0", "os": "linux", "version": "1.0.0.9006", "date": "2026-06-04T19:42:16.000Z", "distro": "noble", "commit": "b878a1ae39a0a834aa5ccdcb4d96be1fa7c4a8d9", "fileid": "c6ce8af1fb9ca4fa9b4391b39e7ac8bcb768f4500c4785780151778250091f76", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/predictiveecology/actions/runs/26974878437" }, { "r": "4.5.3", "os": "mac", "version": "1.0.0.9006", "date": "2026-06-04T19:41:27.000Z", "commit": "b878a1ae39a0a834aa5ccdcb4d96be1fa7c4a8d9", "fileid": "83fec0de5acc115de55c506aa040fc7baf49947b5a59f812524b7b58381ff34d", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/predictiveecology/actions/runs/26974878437" }, { "r": "4.6.0", "os": "mac", "version": "1.0.0.9006", "date": "2026-06-04T19:41:23.000Z", "commit": "b878a1ae39a0a834aa5ccdcb4d96be1fa7c4a8d9", "fileid": "768cfedda8d3d6405cb2d50449d3b358195ffd0396657e0d998630c91a7ecadd", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/predictiveecology/actions/runs/26974878437" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.0.9006", "date": "2026-06-04T19:42:41.000Z", "commit": "b878a1ae39a0a834aa5ccdcb4d96be1fa7c4a8d9", "fileid": "522f15d245d770c2261ff33ded8676c015e1b94a2020264e05dd18f15969b307", "status": "success", "buildurl": "https://github.com/r-universe/predictiveecology/actions/runs/26974878437" }, { "r": "4.7.0", "os": "win", "version": "1.0.0.9006", "date": "2026-06-04T19:41:02.000Z", "commit": "b878a1ae39a0a834aa5ccdcb4d96be1fa7c4a8d9", "fileid": "669e04c004bfb66a8d80d4dd2bafba474593ae64c06325d921c301462a98e3d7", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/predictiveecology/actions/runs/26974878437" }, { "r": "4.5.3", "os": "win", "version": "1.0.0.9006", "date": "2026-06-04T19:41:22.000Z", "commit": "b878a1ae39a0a834aa5ccdcb4d96be1fa7c4a8d9", "fileid": "cadd18a9eaa82b22132417d8c9d1863f8b3db030e05b6995e2c8f7fd5d635c21", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/predictiveecology/actions/runs/26974878437" }, { "r": "4.6.0", "os": "win", "version": "1.0.0.9006", "date": "2026-06-04T19:41:33.000Z", "commit": "b878a1ae39a0a834aa5ccdcb4d96be1fa7c4a8d9", "fileid": "6bbe4442b1cbe059bf44996ef00bc8328149cf89a37ad80f4cb72f86136f3b3b", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/predictiveecology/actions/runs/26974878437" } ] }