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"fuelClassPrep" ] }, { "page": "fuelLinearRange", "title": "Range that puts linear fuel biomass on the scale the spread fit uses", "topics": [ "fuelLinearRange" ] }, { "page": "fuelLogToLinear", "title": "Fuel biomass from the log scale back to the linear scale", "topics": [ "fuelLogToLinear" ] }, { "page": "getFirePoints_NFDB", "title": "Get Fire 'SpatialPoints' from Canadian Fire Database", "topics": [ "getFirePoints_NFDB" ] }, { "page": "getFirePoints_NFDB_V2", "title": "Get Fire 'SpatialPoints' from Canadian Fire Database", "topics": [ "getFirePoints_NFDB_V2" ] }, { "page": "getFirePolygons", "title": "Download and prepare fire data from National Fire Database", "topics": [ "getFirePolygons" ] }, { "page": "harmonizeBufferAndPoints", "title": "Cleaning up the polygon points", "topics": [ "harmonizeBufferAndPoints" ] }, { "page": "harmonizeFireData", "title": "Harmonize fire data", "topics": [ "harmonizeFireData" ] }, { "page": "harmonizeFireDataDeps", "title": "Functions whose code affects what 'harmonizeFireData()' returns", "topics": [ "harmonizeFireDataDeps" ] }, { "page": "hindcastObserved", "title": "Observed fire in an ELF core in one year", "topics": [ "hindcastObserved" ] }, { "page": "hindcastSimulated", "title": "One simulated year in an ELF core", "topics": [ "hindcastSimulated" ] }, { "page": "ignitionFitLedger", "title": "The shared IgnitionFit ledger files", "topics": [ "ignitionFitFilenameFor", "ignitionFitFileTag", "latestIgnitionFits" ] }, { "page": "igOrEscNames", "title": "Construct standardized FireSense object names", "topics": [ "igOrEscNames" ] }, { "page": "isLinearFuelRange", "title": "Was this covariate rescaled as linear fuel biomass?", "topics": [ "isLinearFuelRange" ] }, { "page": "isYoungAge", "title": "Is an age young?", "topics": [ "isYoungAge" ] }, { "page": "latestNBACUrl", "title": "Discover the URL of the most recent NBAC shapefile archive", "topics": [ "latestNBACUrl" ] }, { "page": "lccFlammableShare", "title": "Each land-cover class's share of an ELF's flammable pixels", "topics": [ "lccFlammableShare" ] }, { "page": "logistic", "title": "Multiple-parameter versions of logistic functions", "topics": [ "logistic2p", "logistic3p", "logistic3pUpper", "logistic4p", "logistic5p", "logisticAll" ] }, { "page": "logisticParamNames", "title": "Logistic parameter names", "topics": [ "logisticParamNames" ] }, { "page": "logMinB", "title": "Log with a minimum", "topics": [ "logMinB" ] }, { "page": "makeELFs", "title": "Make Ecologically-based Low Fractal-Dimensional polygons", "topics": [ "makeELFs", "plotELFs" ] }, { "page": "makeFireIDs", "title": "Identify each year's individual fires and buffer them accordingly", "topics": [ "makeFireIDs" ] }, { "page": "makeFireSenseLCC", "title": "Prepare NTEMS Land Cover Data for Fire Simulation Models", "topics": [ "makeFireSenseLCC" ] }, { "page": "makeFireSenseLCCDeps", "title": "Functions whose code affects what 'makeFireSenseLCC()' returns", "topics": [ "makeFireSenseLCCDeps" ] }, { "page": "makeGLM", "title": "Wrapper on 'glm' that creates separate GLMs for each item in fuel", "topics": [ "makeGLM" ] }, { "page": "makeLandcoverDT", "title": "Create 'landcoverDT' object to classify and track non-forest land cover classes", "topics": [ "makeLandcoverDT" ] }, { "page": "makeLociList", "title": "Convert a list of 'SpatialPointsDataFrame' object to a list of 'data.table' objects", "topics": [ "makeLociList" ] }, { "page": "makeMutuallyExclusive", "title": "guarantees mutually exclusive values in a data table", "topics": [ "makeMutuallyExclusive" ] }, { "page": "makeRastersFromCD", "title": "Put 'cohortData' back into a 'SpatRaster' with some extra details", "topics": [ "makeRastersFromCD" ] }, { "page": "makeTSD", "title": "Prepare a time since disturbance map from stand age and fire data", "topics": [ "makeTSD" ] }, { "page": "mergeELFs", "title": "Merge ELF maps as planned", "topics": [ "mergeELFs" ] }, { "page": "mergePreparedCovs", "title": "Build ignition covariates table by stacking/extracting rasters and joining lightning", "topics": [ "mergePreparedCovs" ] }, { "page": "multiplier", "title": "Buffer-size multiplier for fire footprints", "topics": [ "multiplier" ] }, { "page": "mustFit", "title": "Must this run fit, given 'doFit' and the ledger?", "topics": [ "mustFit" ] }, { "page": "nfdbPointUrl", "title": "URL of the National Fire Database point archive", "topics": [ "nfdbPointUrl" ] }, { "page": "nThreads", "title": "Threads for training multi-threaded libraries", "topics": [ "nThreads" ] }, { "page": "omitNullArgs", "title": "Names of the arguments that are 'NULL', to give to 'Cache(omitArgs =)'", "topics": [ "omitNullArgs" ] }, { "page": "paramsSeparate", "title": "Split the character vector of parameters into 'covPars' and 'logisticPars'", "topics": [ "paramsSeparate" ] }, { "page": "plotBurnSummary", "title": "Plot burn summary", "topics": [ "plotBurnSummary" ] }, { "page": "plotCumulativeBurns", "title": "Plot cumulative burn maps", "topics": [ "plotCumulativeBurns" ] }, { "page": "plotHindcastDistributions", "title": "Simulated rep-years beside the observed year", "topics": [ "plotHindcastDistributions" ] }, { "page": "plotHindcastMap", "title": "Burn-frequency map with the observed fires on top", "topics": [ "plotHindcastMap" ] }, { "page": "plotHindcastSizes", "title": "Fire-size distribution, simulated and observed", "topics": [ "plotHindcastSizes" ] }, { "page": "plotHistoricFires", "title": "Plot historic ignitions, escapes, and area burned", "topics": [ "plotHistoricFires" ] }, { "page": "powerLawLink", "title": "The power-law spread link", "topics": [ "powerLawLink" ] }, { "page": "powerLawOmitArgs", "title": "Which arguments a 'link''s cache key leaves out", "topics": [ "powerLawOmitArgs" ] }, { "page": "powerLawPcBounds", "title": "Per-ELF bounds of 'p_c' for the '\"powerLaw\"' link", "topics": [ "powerLawPcBounds" ] }, { "page": "predictIgnition", "title": 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"page": "rasterFireBufferDT", "title": "this is a wrapper to simplify caching of 'lapply' with 'bufferForFireRaster'. Years are iteratively processed by 'makeFireID'.", "topics": [ "rasterFireBufferDT" ] }, { "page": "rasterFireSpreadPoints", "title": "Create a list of annual ignition points based on fire raster", "topics": [ "rasterFireSpreadPoints" ] }, { "page": "rbetaBetween", "title": "Generate random beta variates between 2 values and a mean", "topics": [ "rbetaBetween" ] }, { "page": "readLightningData", "title": "Read lightning data", "topics": [ "readLightningData" ] }, { "page": "removeBufferedFiresOutsideRTM", "title": "Remove buffered fires in 'fireBufferedListDT' that are outside 'flammableRTM'", "topics": [ "removeBufferedFiresOutsideRTM" ] }, { "page": "rescaleCovariates", "title": "Rescale/standardize covariates for modeling", "topics": [ "rescaleCovariates" ] }, { "page": "rescaleKnown2", "title": "rescale function no.2", "topics": [ "rescaleKnown2" ] }, { "page": "rescaleVarsByMagnitude", "title": "Rescale a 'data.table' according to a named vector of rescalers", "topics": [ "rescaleVarsByMagnitude" ] }, { "page": "replicatedBest", "title": "Re-score a population with replication, and pick the best members by their mean", "topics": [ "bestByReplicatedMean", "rescorePopulation" ] }, { "page": "resolveDoFit", "title": "Resolve the 'doFit' parameter of the FireSense fit modules", "topics": [ "resolveDoFit" ] }, { "page": "runDEoptim", "title": "Run 'DEoptim'", "topics": [ "runDEoptim", "termsInDEoptim" ] }, { "page": "runELFs", "title": "Run the ELFs module and return the ELF names or maps", "topics": [ "runELFs" ] }, { "page": "setXgbThreads", "title": "Set the number of threads 'xgboost' uses in this session", "topics": [ "setXgbThreads" ] }, { "page": "sizeRuleLandCover", "title": "Path to the land-cover map the size rule uses", "topics": [ "sizeRuleLandCover" ] }, { "page": "spreadClimateCols", "title": "The climate covariates of a spread formula", "topics": [ "spreadClimateCols" ] }, { "page": "spreadClimateRef", "title": "The climate reference of a 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record", "topics": [ "spreadFitWorkerMemoryGB" ] }, { "page": "spreadIndicators", "title": "Indicator covariates of the spread model", "topics": [ "spreadIndicatorCols", "spreadIndicatorRanges" ] }, { "page": "spreadProbBounds", "title": "The spread-probability ceiling and floor", "topics": [ "spreadPowerLawPcBounds", "spreadProbBounds", "spreadProbCeiling", "spreadProbFloor" ] }, { "page": "spreadProbFromCovs", "title": "The spread probability of each pixel from its covariates: the one place the spread link is computed", "topics": [ "spreadProbFromCovs" ] }, { "page": "spreadProbFromIntegerCovs", "title": "Convert covariates from their 'x1000' integer to usable by spread", "topics": [ "spreadProbFromIntegerCovs" ] }, { "page": "spreadProbGates", "title": "Would parameter sets pass the objective's spreadProb gates in its first block of years?", "topics": [ "spreadProbGates" ] }, { "page": "spreadProbGateTest", "title": "The objective's spread-probability gates, on one year's 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