Package: CBMutils 2.5.7.9001

Céline Boisvenue

CBMutils: Utilities for modelling carbon based on CBM-CFS3

Implementation of several components of the Carbon Budget Model of the Canadian Forest Service (v3).

Authors:Céline Boisvenue [aut, cre], Alex M Chubaty [aut], Eliot McIntire [aut], Ian Eddy [ctb], Camille Giuliano [ctb], Susan Murray [ctb], Dominique Caron [ctb]

CBMutils_2.5.7.9001.tar.gz
CBMutils_2.5.7.9001.zip(r-4.7-any)CBMutils_2.5.7.9001.zip(r-4.6-any)CBMutils_2.5.7.9001.zip(r-4.5-any)
CBMutils_2.5.7.9001.tgz(r-4.6-any)CBMutils_2.5.7.9001.tgz(r-4.5-any)
CBMutils_2.5.7.9001.tar.gz(r-4.7-any)CBMutils_2.5.7.9001.tar.gz(r-4.6-any)
CBMutils_2.5.7.9001.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
CBMutils/json (API)

# Install 'CBMutils' in R:

install.packages('CBMutils', repos = c('https://predictiveecology.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/predictiveecology/cbmutils/issues

Datasets:

CBMsources - CBM Data Sources

On CRAN:

4.89 score 3 scripts 53 exports 76 dependencies

Last updated from:9af26b492f (on development). Checks:7 WARNING, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel	WARNING	331
source / vignettes	OK	305
linux-release	WARNING	313
macos-release	WARNING	375
macos-oldrel	WARNING	208
windows-devel	WARNING	224
windows-release	WARNING	263
windows-oldrel	WARNING	275
wasm-release	OK	167

Exports:adjustCohortAges ageStepBackward b_m biomProp biomPropAGB boudewynSubsetTables calcC calcRootC cbm4MapNPP cbm4MapTotalCarbon cbm4PlotEmissionsProducts cbm4PlotPoolProportions CBMsourceExtractToRast CBMsourcePrepInputs convertAGB2pools convertM3biom cTransfersAlluvial cumPoolsCreate cumPoolsCreateAGB cumPoolsSmooth distMatch extractToRast gcidsCreate m3ToBiomPlots mapNPP mapTotalCarbon nmfac plotEmissionsProducts plotPoolProportions ReticulateFindPython sapfac seeDist simCBMdbReadRaw simCBMdbReadSummary simCBMdbReadTable simCBMdbWrite simDist simMapNPP simMapTotalCarbon simPlotEmissionsProducts simPlotPoolProportions spadesCBMdbMapNPP spadesCBMdbMapTotalCarbon spadesCBMdbPlotEmissionsProducts spadesCBMdbPlotPoolProportions spadesCBMdbReadRaw spadesCBMdbReadSummary spadesCBMdbReadTable sppMatch spuDistList spuDistMatch spuHistDist writeRasterWithValues

Dependencies:base64enc bit bit64 blob cachem class classInt cli cowplot cpp11 data.table DBI DEoptimR dplyr e1071 evaluate farver fastmap generics ggalluvial ggforce ggplot2 glue gtable here highr isoband jsonlite KernSmooth knitr labeling lattice lazyeval lifecycle magrittr MASS Matrix memoise patchwork pillar pkgconfig png polyclip proxy purrr R6 rappdirs RColorBrewer Rcpp RcppTOML reticulate rlang robustbase rprojroot RSQLite s2 S7 scales sf stringi stringr systemfonts terra tibble tidyr tidyselect tidyterra tweenr units utf8 vctrs viridisLite withr wk xfun yaml

i-overview

Rendered fromi-overview.Rmdusingknitr::rmarkdown

Last update: 2020-10-02
Started: 2020-07-29

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Adjust cohort ages	adjustCohortAges
Age Step Backwards	ageStepBackward
Extract alternative set of parameters to apply to convert total biomass into pool biomass.	alternativeParams
Calculate stemwood biomass (per ha) of live merchantable trees	b_m
Proportions of total tree biomass in stemwood, bark, branches, and foliage	biomProp
Calculates proportions of total tree biomass in stemwood, bark, branches, and foliage.	biomPropAGB
Subset Boudewyn tables to fit study area	boudewynSubsetTables
Sum carbon for 'totalCarbon' or 'aboveGround' or 'belowGround'	calcC
'calcRootC'	calcRootC
CBM4: 'mapNPP'	cbm4MapNPP
CBM4: 'mapTotalCarbon'	cbm4MapTotalCarbon
CBM4: 'plotEmissionsProducts'	cbm4PlotEmissionsProducts
CBM4: 'plotPoolProportions'	cbm4PlotPoolProportions
CBM source: Extract to raster	CBMsourceExtractToRast
CBM source: Prep inputs	CBMsourcePrepInputs
CBM Data Sources	CBMsources
Convert total above ground biomass into 3 pools (T/ha).	convertAGB2pools
Calculate biomass from gross merchantable volume	convertM3biom
'cTransfersAlluvial'	cTransfersAlluvial
Create 'cumPools' data.table	cumPoolsCreate
Convert total above ground biomass into 3 carbon pools (T/ha). Implements the flowchart from figure 3 of Boudewyn et al. (2007) using an alternative set of parameter to divide total above ground biomass (T/ha) into total merchantable stemwood biomass (T/ha), foliage biomass (T/ha), and other wood biomass (T/ha). Biomass to converted to carbon using the biomass to carbon conversion factor.	cumPoolsCreateAGB
Smooth the 'cumPools' 'data.table'	cumPoolsSmooth
CBM-CFS3 Disturbance types	distList
CBM-CFS3 Disturbances Match	distMatch
Extract to raster	extractToRast
Standardized way to create gcids	gcidsCreate
Extract the parameters to apply to convert total biomass into pool biomass.	getParameters
Makes plots of all columns for each id_col ID	m3ToBiomPlots
'mapNPP'	mapNPP
'mapTotalCarbon'	mapTotalCarbon
Expansion factor for non-merchantable live tree biomass	nmfac
'plotEmissionsProducts'	plotEmissionsProducts
'plotPoolProportions'	plotPoolProportions
propMerch	propMerch
Reticulate Find Python	ReticulateFindPython
Expansion factor for sapling-sized trees	sapfac
See disturbances	seeDist
simList: Read SpaDES CBM database	simCBMdbReadRaw
simList: Read SpaDES CBM database summary	simCBMdbReadSummary
simList: Read SpaDES CBM database table	simCBMdbReadTable
simList: Write SpaDES CBM database	simCBMdbWrite
See disturbances in simList	simDist
'simMapNPP'	simMapNPP
'simMapTotalCarbon'	simMapTotalCarbon
'simPlotEmissionsProducts'	simPlotEmissionsProducts
'simPlotPoolProportions'	simPlotPoolProportions
spadesCBMdb: 'mapNPP'	spadesCBMdbMapNPP
spadesCBMdb 'simMapTotalCarbon'	spadesCBMdbMapTotalCarbon
spadesCBMdb 'plotEmissionsProducts'	spadesCBMdbPlotEmissionsProducts
spadesCBMdb 'simPlotPoolProportions'	spadesCBMdbPlotPoolProportions
Read CBM SpaDES CBM database	spadesCBMdbReadRaw
Read CBM SpaDES CBM database summary	spadesCBMdbReadSummary
Read SpaDES CBM database table	spadesCBMdbReadTable
Species match	sppMatch
CBM-CFS3 Spatial Unit Disturbances	spuDistList
CBM-CFS3 Spatial Unit Disturbances Match	spuDistMatch
CBM-CFS3 Historical Disturbances	spuHistDist
Write raster with values	writeRasterWithValues