Package: LandWebUtils 1.0.2

Alex M Chubaty

LandWebUtils: Helper functions for the LandWeb project

Additional utilities for LandWeb analyses.

Authors:Eliot J B McIntire [aut], Alex M Chubaty [aut, cre], His Majesty the Queen in Right of Canada, as represented by the Minister of Natural Resources Canada [cph]

LandWebUtils_1.0.2.tar.gz
LandWebUtils_1.0.2.zip(r-4.5)LandWebUtils_1.0.2.zip(r-4.4)LandWebUtils_1.0.2.zip(r-4.3)
LandWebUtils_1.0.2.tgz(r-4.4-any)LandWebUtils_1.0.2.tgz(r-4.3-any)
LandWebUtils_1.0.2.tar.gz(r-4.5-noble)LandWebUtils_1.0.2.tar.gz(r-4.4-noble)
LandWebUtils_1.0.2.tgz(r-4.4-emscripten)LandWebUtils_1.0.2.tgz(r-4.3-emscripten)
LandWebUtils.pdf |LandWebUtils.html✨
LandWebUtils/json (API)

# Install 'LandWebUtils' in R:
install.packages('LandWebUtils', repos = c('https://predictiveecology.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/predictiveecology/landwebutils/issues

On CRAN:

landscape-ecologysimulation-modeling

2.70 score 2 stars 2 scripts 26 exports 137 dependencies

Last updated 21 days agofrom:2bea977a09 (on development). Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 18 2024
R-4.5-winOKOct 31 2024
R-4.5-linuxOKNov 18 2024
R-4.4-winOKOct 31 2024
R-4.4-macOKOct 31 2024
R-4.3-winOKOct 31 2024
R-4.3-macOKOct 31 2024

Exports:.cleanLandWebStudyArea.doPlotBoxplotanalysesOutputsTimesCASFRItoSpRastscleanAreaNamefindSimFilelandmine_burn1landmine_optim_burnFunlandmine_optim_clusterExportlandmine_optim_clusterSetuplandmine_optim_clusterWraplandmine_optim_fitSNlandmine_optim_fitSN2landmine_plot_areaBurnedOverTimelandmine_plot_FRIlandmine_plot_LTHFCLargePatchesLeadingVegTypeByAgeClassloadCASFRImeanTruncParetopolygonCleanprepSpeciesLayers_CASFRIrasterListByPolyrunBoxPlotsVegCoverrunHistsLargePatchesrunHistsVegCover

Dependencies:abindamcaskpassbackportsbase64encbitopsbootbroomcarcarDatacheckmateclassclassIntclicodetoolscolorspacecorrplotcowplotcpp11crayoncurldata.tableDBIdeldirDerivdigestdismodoBydplyre1071fansifarverfastdigestfasterizefilelockFormulafpComparefsfuturefuture.applygenericsggplot2ggpubrggrepelggsciggsignifggspatialglobalsgluegridExtragtablehexbinhmshttrinsightinterpisobandjpegjsonliteKernSmoothlabelingLandRlatticelatticeExtralifecyclelistenvlme4lobstrmagrittrmapMASSMatrixMatrixModelsmgcvmicrobenchmarkmimeminqamodelrMuMInmunsellnlmenloptrnnetnumDerivopensslparallellypbkrtestpemiscpeutilspillarpkgconfigpngpolynomprettyunitsprogressproxypurrrquantregquickPlotR6rasterrasterVisRColorBrewerRcppRcppArmadilloRcppEigenRCurlreproducibleRequirergeosrlangrosmrstatixs2scalessfspSpaDES.toolsSparseMstringistringrsurvivalsysterratibbletidyrtidyselecttidyterratilerunitsutf8vctrsviridisviridisLitewithrwkzoo

Readme and manuals

Help Manual

Help pageTopics
Clean up the LandWeb study area from David Andison.cleanLandWebStudyArea
Simulation timesteps for analysesanalysesOutputsTimes
'CASFRItoSpRasts'CASFRItoSpRasts
Extract study area name from run namecleanAreaName
Find LandWeb simulation output filefindSimFile
Core Burn function for Andison's LandMine Fire Modulelandmine_burn landmine_burn1
LandMine burn optimization functionlandmine_optim_burnFun
Export objects used for optimization and load packages on clusterlandmine_optim_clusterExport
Setup a cluster for LandMine optimizationlandmine_optim_clusterSetup
Wrapper function to setup cluster, export objects and load packageslandmine_optim_clusterWrap
LandMine objective functionslandmine_optim_fitSN landmine_optim_fitSN2
LandMine diagnostic plotslandmine_plots landmine_plot_areaBurnedOverTime landmine_plot_FRI landmine_plot_LTHFC
Calculate proportion of large patches in NRVLargePatches
Calculate proportion of landscape occupied by each vegetation classLeadingVegTypeByAgeClass
Load CASFRI data for LandWebloadCASFRI
Calculate the mean of a truncated Pareto distributionmeanTruncPareto
Do an arbitrary set of operations on a polygonpolygonClean
Prepare species layers from CASFRI v4prepSpeciesLayers_CASFRI
Create a list of rasters in each rep, at each timestep, for each polygon arearasterListByPoly
Generate box and whisker plots for leading vegetation coverrunBoxPlotsVegCover
Generate histograms for large patchesrunHistsLargePatches
Generate histograms for leading vegetation coverrunHistsVegCover