Package: SpaDES.experiment 0.0.2.9005
Eliot J B McIntire
SpaDES.experiment: Simulation Experiments Within The SpaDES Ecosystem
Tools to do simulation experiments within the SpaDES ecosystem. This includes replication, parameter sweeps, scenario analysis, pattern oriented modeling, and simulation experiments. The package introduces a new object class, the simLists, which is an environment that contains many simList class objects. This package also includes tools to do post hoc analyses of such simLists objects.
Authors:
SpaDES.experiment_0.0.2.9005.tar.gz
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SpaDES.experiment.pdf |SpaDES.experiment.html✨
SpaDES.experiment/json (API)
NEWS
| # Install 'SpaDES.experiment' in R: |
| install.packages('SpaDES.experiment', repos = c('https://predictiveecology.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/predictiveecology/spades.experiment/issues
Last updated 10 months agofrom:bc37fb3507 (on development). Checks:OK: 1 ERROR: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 27 2024 |
| R-4.5-win | ERROR | Oct 27 2024 |
| R-4.5-linux | ERROR | Oct 27 2024 |
| R-4.4-win | ERROR | Oct 27 2024 |
| R-4.4-mac | ERROR | Oct 27 2024 |
| R-4.3-win | ERROR | Oct 27 2024 |
| R-4.3-mac | ERROR | Oct 27 2024 |
Exports:experimentexperiment2initializePOMshowsimInitAndExperiment
Dependencies:askpassBHclicodetoolscpp11crayoncurldata.tableDEoptimdigestfansifilelockfpComparefsfuturefuture.applygargleglobalsgluegoogledrivehttrigraphjsonlitelatticelifecyclelistenvlobstrmagrittrMatrixmimeopensslparallellypillarpkgconfigprettyunitspurrrqsquickPlotR6RApiSerializerappdirsrasterRcppRcppParallelreproducibleRequirerlangspSpaDES.corestringfishsysterratibbleutf8uuidvctrswhiskerwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Categorized overview of the 'SpaDES.experiment' package | SpaDES.experiment-package SpaDES.experiment |
| Coerce elements of a 'simLists' object to a 'data.table' | as.data.table.simLists |
| Run an experiment using 'SpaDES.core::spades()' | experiment experiment,simList-method |
| Run experiment, algorithm 2, using 'SpaDES.core::spades()' | experiment2 experiment2,simList-method |
| Generate a 'simLists' object | initialize,simLists-method |
| Use Pattern Oriented Modeling to fit unknown parameters | POM POM,simList,character-method |
| Show method for 'simLists' | show,simLists-method |
| Run 'simInit' and 'Experiment' in one step | simInitAndExperiment |
| The 'simLists' class | simLists simLists-class |