Package: usefulFuns 0.1.1

Tati Micheletti

usefulFuns: Useful functions for my modules and packages

A few functions and wrappers around useful code.

Authors:Tati Micheletti

usefulFuns_0.1.1.tar.gz
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usefulFuns_0.1.1.tgz(r-4.4-any)usefulFuns_0.1.1.tgz(r-4.3-any)
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usefulFuns.pdf |usefulFuns.html✨
usefulFuns/json (API)

# Install 'usefulFuns' in R:

install.packages('usefulFuns', repos = c('https://predictiveecology.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/predictiveecology/usefulfuns/issues

On CRAN:

1.70 score 1 scripts 37 exports 158 dependencies

Last updated 10 months agofrom:bc28411fd2 (on development). Checks:OK: 5 NOTE: 2. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 27 2024
R-4.5-win	NOTE	Oct 27 2024
R-4.5-linux	NOTE	Oct 27 2024
R-4.4-win	OK	Oct 27 2024
R-4.4-mac	OK	Oct 27 2024
R-4.3-win	OK	Oct 27 2024
R-4.3-mac	OK	Oct 27 2024

Exports:avrgTimeComparison biomassPerSpeciesYearGIF biomassYearGIF bootstrapPercentChanges bringObjectTS calculatePixelsInaRule cbindFromList changeTraits checkPackagesVersions classifyWetlands createDynamicLayersRSF createModels createModObject createShrubHerbLayers createStaticLayersRSF defineStudyArea extractDisturbanceFast forestAgePlot getLayers grepMulti makeReclassifyMatrix meanValuesTime modulesAvailable moduleSticker nameAndBringOn plotBurnSummary plotLeadingVegetationType plotVegetationBiomass prepareClimateLayers prepInputsLayers_DUCKS prepInputStack provinceBCRStudyArea reviseSpeciesTraits RSFplot subsetNonNARas substrBoth totalBiomassPerSpecies

Dependencies:abind amc animation askpass backports base64enc BH bitops boot broom car carData checkmate class classInt cli codetools colorspace corrplot cowplot cpp11 crayon curl data.table DBI deldir Deriv digest dismo doBy dplyr e1071 effsize fansi farver fasterize filelock Formula fpCompare fs future future.apply gargle generics ggfun ggimage ggplot2 ggplotify ggpubr ggrepel ggsci ggsignif ggspatial globals glue googledrive gridExtra gridGraphics gtable hexbin hexSticker hms httr igraph insight interp isoband jpeg jsonlite KernSmooth labeling LandR lattice latticeExtra lifecycle listenv lme4 lobstr magick magrittr MASS Matrix MatrixModels mgcv microbenchmark mime minqa modelr MuMIn munsell nlme nloptr nnet numDeriv openssl parallelly pbkrtest pemisc peutils pillar pkgconfig png polynom prettyunits progress proxy pryr purrr qs quantreg quickPlot R6 RApiSerialize rappdirs raster rasterVis RColorBrewer Rcpp RcppArmadillo RcppEigen RcppParallel RCurl reproducible Require rlang rosm rstatix s2 scales sf showtext showtextdb sp SpaDES.core SpaDES.tools SparseM stringfish stringi stringr survival sys sysfonts terra tibble tidyr tidyselect tidyterra units utf8 uuid vctrs viridis viridisLite whisker withr wk yulab.utils zoo

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
'usefulFuns' package	usefulFuns-package usefulFuns
Compare two or more scenarios for averages through time	avrgTimeComparison
Creates a GIF of biomass change	biomassPerSpeciesYearGIF
Creates a GIF of total biomass change	biomassYearGIF
Bootstrap rasters for testing significance on comparable rasters of different species or scenarios	bootstrapPercentChanges
Bring objects that represent time series into a list	bringObjectTS
Calculate pixels in a rule	calculatePixelsInaRule
Column binds a list of 'data.frame's or 'data.table's	cbindFromList
Provides an easy way of modifying species traits table in 'LandR' by multiplication of original traits by a specified factor	changeTraits
All packages' versioning	checkPackagesVersions
Classify wetlands (really!) using the wetlands layer set as input and a either LCC05 or LCC2010	classifyWetlands
Create the necessary layers for predictive caribou RSF module.	createDynamicLayersRSF createStaticLayersRSF
Write an equation based on a 'data.frame' (or 'data.table'), bootstrapping a set of covariates around the standard error present in the table.	createEquation
Create caribou models based on 2011 ECCC report on population demographics and RSF.	createModels
Create a simulation model object	createModObject
Creates the necessary shrub or herb layers for predictive caribou RSF module.	createShrubHerbLayers
Preparing study area for Canadian projects	defineStudyArea
Extract disturbance of anthropogenic and fire	extractDisturbanceFast
Plots of forest age	forestAgePlot
Get the necessary layers for predictive modules such as 'caribouPopGrowth' and 'caribouRSF'.	getLayers
Grep using multiple patterns	grepMulti
Create a matrix to use for reclassification of rasters	makeReclassifyMatrix
Calculates the mean value of rasters through time	meanValuesTime
Show the modules that have stickers available	modulesAvailable
Function to create stickers for 'SpaDES' modules	moduleSticker
Name a raster, 'postProcess' it using RTM, and brings it to memory	nameAndBringOn
Plots summary of burns	plotBurnSummary
Plots Leading Vegetation Type using 'cohortData' and 'pixelGroupMap'	plotLeadingVegetationType
Plots vegetation biomass type using 'cohortData' and 'pixelGroupMap'	plotVegetationBiomass
Create raster stack for climate sensitive models	prepareClimateLayers
Prepare DUCKS layer	prepInputsLayers_DUCKS
Simple wrapper around 'prepInputs' for a stack of raster layers	prepInputStack
Preparing study area based on BCR and Canadian or American provinces or states.	provinceBCRStudyArea
Bootstraps rasters for testing significance on comparable rasters of different species or scenarios	reviseSpeciesTraits
ECCC's RSF plot style	RSFplot
Get all the values of a raster and remove the NA's, keeping pixel ID.	subsetNonNARas
Get a sub-string based on the number of characters and the side to start	substrBoth
Plots biomass per species: proportional or absolute, and total or just overstory	totalBiomassPerSpecies