Package: usefulFuns 0.1.1

Tati Micheletti

usefulFuns: Useful functions for my modules and packages

A few functions and wrappers around useful code.

Authors:Tati Micheletti

usefulFuns_0.1.1.tar.gz

manual.pdf |manual.html✨
card.svg |card.png
usefulFuns/json (API)

# Install 'usefulFuns' in R:

install.packages('usefulFuns', repos = c('https://predictiveecology.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/predictiveecology/usefulfuns/issues

On CRAN:

1.70 score 1 scripts 37 exports 158 dependencies

Last updated from:daae9ec736 (on development). Checks:7 FAIL, 1 OK, 1 NOTE. Indexed: yes.

The latest version of this package failed to build. Look at thebuild logs for more information.

Target	Result	Time
linux-devel-x86_64	FAIL	183
source / vignettes	OK	367
linux-release-x86_64	NOTE	367
macos-devel-arm64	FAIL	100
macos-release-arm64	FAIL	142
windows-devel	FAIL	75
windows-release	FAIL	84
windows-oldrel	FAIL	78
wasm-release	FAIL	216

Exports:avrgTimeComparison biomassPerSpeciesYearGIF biomassYearGIF bootstrapPercentChanges bringObjectTS calculatePixelsInaRule cbindFromList changeTraits checkPackagesVersions classifyWetlands createDynamicLayersRSF createModels createModObject createShrubHerbLayers createStaticLayersRSF defineStudyArea extractDisturbanceFast forestAgePlot getLayers grepMulti makeReclassifyMatrix meanValuesTime modulesAvailable moduleSticker nameAndBringOn plotBurnSummary plotLeadingVegetationType plotVegetationBiomass prepareClimateLayers prepInputsLayers_DUCKS prepInputStack provinceBCRStudyArea reviseSpeciesTraits RSFplot subsetNonNARas substrBoth totalBiomassPerSpecies

Dependencies:abind amc animation askpass backports base64enc bitops boot bslib cachem checkmate class classInt cli codetools cpp11 crayon curl data.table DBI deldir digest dismo dplyr e1071 effsize evaluate farver fasterize fastmap filelock fontawesome fontBitstreamVera fontLiberation fontquiver Formula fpCompare fs future future.apply gargle gdtools generics ggfun ggimage ggiraph ggplot2 ggplotify ggspatial globals glue googledrive gridExtra gridGraphics gtable hexbin hexSticker highr hms htmltools htmlwidgets httr httr2 igraph insight interp isoband jpeg jquerylib jsonlite KernSmooth knitr labeling LandR lattice latticeExtra lifecycle listenv lme4 lobstr magick magrittr MASS Matrix memoise mime minqa MuMIn nlme nloptr openssl parallelly patchwork pemisc peutils pillar pkgconfig png prettyunits progress proxy pryr purrr qs2 quickPlot R6 rappdirs raster rasterVis rbibutils RColorBrewer Rcpp RcppArmadillo RcppEigen RcppParallel RCurl Rdpack reformulas reproducible Require rlang rmarkdown rosm s2 S7 sass scales sf showtext showtextdb sp SpaDES.core SpaDES.tools stringfish stringi stringr sys sysfonts systemfonts terra tibble tidyr tidyselect tidyterra tinytex units utf8 uuid vctrs viridis viridisLite whisker withr wk xfun yaml yulab.utils zoo

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
'usefulFuns' package	usefulFuns-package usefulFuns
Compare two or more scenarios for averages through time	avrgTimeComparison
Creates a GIF of biomass change	biomassPerSpeciesYearGIF
Creates a GIF of total biomass change	biomassYearGIF
Bootstrap rasters for testing significance on comparable rasters of different species or scenarios	bootstrapPercentChanges
Bring objects that represent time series into a list	bringObjectTS
Calculate pixels in a rule	calculatePixelsInaRule
Column binds a list of 'data.frame's or 'data.table's	cbindFromList
Provides an easy way of modifying species traits table in 'LandR' by multiplication of original traits by a specified factor	changeTraits
All packages' versioning	checkPackagesVersions
Classify wetlands (really!) using the wetlands layer set as input and a either LCC05 or LCC2010	classifyWetlands
Create the necessary layers for predictive caribou RSF module.	createDynamicLayersRSF createStaticLayersRSF
Write an equation based on a 'data.frame' (or 'data.table'), bootstrapping a set of covariates around the standard error present in the table.	createEquation
Create caribou models based on 2011 ECCC report on population demographics and RSF.	createModels
Create a simulation model object	createModObject
Creates the necessary shrub or herb layers for predictive caribou RSF module.	createShrubHerbLayers
Preparing study area for Canadian projects	defineStudyArea
Extract disturbance of anthropogenic and fire	extractDisturbanceFast
Plots of forest age	forestAgePlot
Get the necessary layers for predictive modules such as 'caribouPopGrowth' and 'caribouRSF'.	getLayers
Grep using multiple patterns	grepMulti
Create a matrix to use for reclassification of rasters	makeReclassifyMatrix
Calculates the mean value of rasters through time	meanValuesTime
Show the modules that have stickers available	modulesAvailable
Function to create stickers for 'SpaDES' modules	moduleSticker
Name a raster, 'postProcess' it using RTM, and brings it to memory	nameAndBringOn
Plots summary of burns	plotBurnSummary
Plots Leading Vegetation Type using 'cohortData' and 'pixelGroupMap'	plotLeadingVegetationType
Plots vegetation biomass type using 'cohortData' and 'pixelGroupMap'	plotVegetationBiomass
Create raster stack for climate sensitive models	prepareClimateLayers
Prepare DUCKS layer	prepInputsLayers_DUCKS
Simple wrapper around 'prepInputs' for a stack of raster layers	prepInputStack
Preparing study area based on BCR and Canadian or American provinces or states.	provinceBCRStudyArea
Bootstraps rasters for testing significance on comparable rasters of different species or scenarios	reviseSpeciesTraits
ECCC's RSF plot style	RSFplot
Get all the values of a raster and remove the NA's, keeping pixel ID.	subsetNonNARas
Get a sub-string based on the number of characters and the side to start	substrBoth
Plots biomass per species: proportional or absolute, and total or just overstory	totalBiomassPerSpecies