Package: PSPclean 1.0.0.9006

Ian M S Eddy

PSPclean: Sources and standardizes permanent sample plot data

Converts all data into two keyed tables. One is for tree measurements, and the other is for plot data. Some arguments exist for handling disturbance agents.

Authors:Ian M S Eddy [aut, cre], Alex M Chubaty [ctb]

PSPclean_1.0.0.9006.tar.gz
PSPclean_1.0.0.9006.zip(r-4.7)PSPclean_1.0.0.9006.zip(r-4.6)PSPclean_1.0.0.9006.zip(r-4.5)
PSPclean_1.0.0.9006.tgz(r-4.6-any)PSPclean_1.0.0.9006.tgz(r-4.5-any)
PSPclean_1.0.0.9006.tar.gz(r-4.7-any)PSPclean_1.0.0.9006.tar.gz(r-4.6-any)
PSPclean_1.0.0.9006.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PSPclean/json (API)

# Install 'PSPclean' in R:
install.packages('PSPclean', repos = c('https://predictiveecology.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ianmseddy/pspclean/issues

On CRAN:

Conda:

3.26 score 1 scripts 25 exports 109 dependencies

Last updated from:b878a1ae39 (on development). Checks:7 ERROR, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR233
source / vignettesOK240
linux-release-x86_64ERROR225
macos-release-arm64ERROR138
macos-oldrel-arm64ERROR171
windows-develERROR181
windows-releaseERROR198
windows-oldrelERROR161
wasm-releaseOK156

Exports:assessTreeNumberConsistencyclassify_tree_statusdataPurification_ABPSPdataPurification_BCPSPdataPurification_NBPSPdataPurification_NFIPSPdataPurification_ONPSPdataPurification_QCPSPdataPurification_SKPSPdataPurification_SKTSP_Mistikdetect_dbh_outliersgeoCleanPSPgetPSPprepInputsAlbertaPSPprepInputsBCPSPprepInputsNBPSPprepInputsNFIPSPprepInputsOntarioPSPprepInputsQCPSPprepInputsSaskatchwanPSPprepInputsSaskatchwanTSPprepPSP_climateNAprocess_dbh_issuesstandardizeSpeciesNamestreenum_to_multiplePSP

Dependencies:abindamcaskpassbackportsbase64encbitbit64bitopsbootcallrcheckmateclassclassIntclicpp11crayoncurldata.tableDBIdigestdismodplyre1071farverfasterizefilelockFormulafpComparefsgenericsggplot2ggspatialgluegridExtragtablehmshttrhttr2insightisobandjpegjsonliteKernSmoothlabelingLandRlatticelifecyclelme4lobstrmagrittrMASSMatrixmimeminqaMuMInnlmenloptropensslpakparallellypatchworkpemiscpeutilspillarpkgconfigpngprettyunitsprocessxprogressproxypspurrrquickPlotR6rappdirsrasterrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRCurlRdpackreformulasreproducibleRequirerlangrosms2S7scalessfspSpaDES.toolsstringistringrsysterratibbletidyrtidyselecttidyterraunitsutf8vctrsviridisviridisLitewithrwk

Readme and manuals

Help Manual

Help pageTopics
Analyze Regeneration Proportion and Tree DBH GrowthassessTreeNumberConsistency
Classify Tree Status Based on Measurement Historyclassify_tree_status
Standardize and Treat the Alberta PSP DatadataPurification_ABPSP
#' Standardize and Treat the BC PSP DatadataPurification_BCPSP
Standardize and Treat the New Brunswick PSP DatadataPurification_NBPSP
Standardize and Treat the NFI PSP DatadataPurification_NFIPSP
#' Standardize and Treat the Ontario PSP DatadataPurification_ONPSP
Standardize and Treat the Quebec PSP DatadataPurification_QCPSP
Standardize and Treat the Saskatchewan PSP DatadataPurification_SKPSP
standardize and treat the Saskatchewan Mistik temporary sample plot data This function will be deprecateddataPurification_SKTSP_Mistik
Detect and flag DBH outliers using z-scores by plotdetect_dbh_outliers
convert plot location data to long/lat and output in a sf objectgeoCleanPSP
return a merged PSP object from a vector of data sourcesgetPSP
source the Alberta PSP dataprepInputsAlbertaPSP
Source the BC PSP dataprepInputsBCPSP
retrieve the New Brunswick PSP raw dataprepInputsNBPSP
source the NFI PSP dataprepInputsNFIPSP
retrieve preprocessed Ontario PSP and PGP dataprepInputsOntarioPSP
retrieve the Quebec PSP raw dataprepInputsQCPSP
source the Saskatchewan PSP dataprepInputsSaskatchwanPSP
source the Saskatchewan PSP dataprepInputsSaskatchwanTSP
standardize and treat the BC PSP dataprepPSP_climateNA
Process Implausible DBH Changes Across Measurement Yearsprocess_dbh_issues
standardize the species names in a given PSP measurement data.tablestandardizeSpeciesNames
Identify Tree Numbers Linked to Multiple Species Within a Plottreenum_to_multiplePSP