Package: SDMTools 1.1-221.2

ORPHANED

SDMTools: Species Distribution Modelling Tools: Tools for processing data associated with species distribution modelling exercises

This packages provides a set of tools for post processing the outcomes of species distribution modeling exercises. It includes novel methods for comparing models and tracking changes in distributions through time. It further includes methods for visualizing outcomes, selecting thresholds, calculating measures of accuracy and landscape fragmentation statistics, etc.. This package was made possible in part by financial support from the Australian Research Council & ARC Research Network for Earth System Science.

Authors:Jeremy VanDerWal, Lorena Falconi, Stephanie Januchowski, Luke Shoo and Collin Storlie

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SDMTools.pdf |SDMTools.html✨
SDMTools/json (API)

# Install 'SDMTools' in R:
install.packages('SDMTools', repos = c('https://predictiveecology.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/s-u/sdmtools/issues

On CRAN:

3.52 score 5 stars 666 scripts 378 downloads 51 exports 3 dependencies

Last updated 5 years agofrom:4f193c85e2. Checks:ERROR: 1 NOTE: 8. Indexed: no.

TargetResultDate
Doc / VignettesFAILDec 07 2024
R-4.5-win-x86_64NOTENov 04 2024
R-4.5-linux-x86_64NOTENov 04 2024
R-4.4-win-x86_64NOTEDec 07 2024
R-4.4-mac-x86_64NOTEDec 07 2024
R-4.4-mac-aarch64NOTEDec 07 2024
R-4.3-win-x86_64NOTEDec 07 2024
R-4.3-mac-x86_64NOTEDec 07 2024
R-4.3-mac-aarch64NOTEDec 07 2024

Exports:accuracyas.ascasc.from.rasterasc.from.spasc2dataframeaspectauccircular.averagingClassStatCOGravitycompare.matrixconfusion.matrixConnCompLabeldataframe2ascdestinationdistanceextract.datagetXYcoordsgrid.areagrid.infogrid.perimeterImageDiffIstatKappalcmwlegend.gradientomissionoptim.threshPatchStatpnt.in.polyprop.correctput.dataquick.mapraster.from.ascread.ascread.asc.gzScalebarsensitivitySigDiffslopesp.from.ascspecificityvector.averagingwrite.ascwrite.asc.gzwrite.asc2write.asc2.gzwt.meanwt.sdwt.varZonalStat

Dependencies:R.methodsS3R.ooR.utils

Readme and manuals

Help Manual

Help pageTopics
Measures of Model Accuracyaccuracy
Raster conversion functions for adehabitat, raster and sp packagesas.asc asc.from.raster asc.from.sp raster.from.asc sp.from.asc
Ascii Grid Files to Dataframe and Dataframe to Ascii Grid Filesasc2dataframe dataframe2asc
Area Under the Curve of the Reciever Operating Curveauc
Circular Averaging based on Vector Averagingcircular.averaging vector.averaging
Landscape Class StatisticsClassStat
Centre of Gravity or Mass calculations for spatial dataCOGravity
Biplot Comparison of Matricescompare.matrix
Confusion Matrixconfusion.matrix
Connected Components Labelling - Unique Patch LabellingConnCompLabel
Vincenty Direct Calculation of a Destinationdestination
Vincenty Direct Calculation of Distance and Directiondistance
Spatial Join of Points with Raster Gridsextract.data
Computes the X and Y Coordinates of the Pixels of a Raster MapgetXYcoords
Create a Grid of Cell Areas or Perimetersgrid.area grid.perimeter
Grid Information from Geographic (lat lon) Projectionsgrid.info
I Similarity Statistic for Quantifying Niche OverlapIstat
Kappa StatisticKappa
Least Cost Moving Windows Calculationlcmw
Legend Gradientlegend.gradient
Measures of Accuracyomission prop.correct sensitivity specificity
Estimation of Optimal Threshold Valuesoptim.thresh
Landscape Patch StatisticsPatchStat
Point in Polygonpnt.in.poly
Spatial Join of Points with Raster Grids - replace dataput.data
Quick Mapquick.map
ESRI ASCII Raster File Import And Exportimage.asc print.asc read.asc read.asc.gz write.asc write.asc.gz write.asc2 write.asc2.gz
Scalebar for Projected MapsScalebar
Identify Regions of Significant DifferencesImageDiff SigDiff
Slope and aspect calculationsaspect slope
Weighted mean, variance and standard deviation calculationswt.mean wt.sd wt.var
Landscape Zonal StatisticsZonalStat